_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-pd-mirna-3-0 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.3.0
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix miRNA-3_0
Description:

Platform Design Info for Affymetrix miRNA-3_0.

r-powsc 1.18.0
Propagated dependencies: r-summarizedexperiment@1.38.1 r-singlecellexperiment@1.30.1 r-rcolorbrewer@1.1-3 r-pheatmap@1.0.12 r-mast@1.33.0 r-limma@3.64.1 r-ggplot2@3.5.2 r-biobase@2.68.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/POWSC
Licenses: GPL 2
Synopsis: Simulation, power evaluation, and sample size recommendation for single cell RNA-seq
Description:

Determining the sample size for adequate power to detect statistical significance is a crucial step at the design stage for high-throughput experiments. Even though a number of methods and tools are available for sample size calculation for microarray and RNA-seq in the context of differential expression (DE), this topic in the field of single-cell RNA sequencing is understudied. Moreover, the unique data characteristics present in scRNA-seq such as sparsity and heterogeneity increase the challenge. We propose POWSC, a simulation-based method, to provide power evaluation and sample size recommendation for single-cell RNA sequencing DE analysis. POWSC consists of a data simulator that creates realistic expression data, and a power assessor that provides a comprehensive evaluation and visualization of the power and sample size relationship.

r-pd-genomewidesnp-5 3.14.1
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.genomewidesnp.5
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix GenomeWideSNP_5
Description:

Platform Design Info for Affymetrix GenomeWideSNP_5.

r-pd-wheat 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.wheat
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name wheat
Description:

Platform Design Info for The Manufacturer's Name wheat.

r-pd-rjpgene-1-1-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rjpgene.1.1.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix RJpGene-1_1-st
Description:

Platform Design Info for Affymetrix RJpGene-1_1-st.

r-pviz 1.44.0
Propagated dependencies: r-iranges@2.42.0 r-gviz@1.52.0 r-genomicranges@1.60.0 r-data-table@1.17.4 r-biovizbase@1.56.0 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/Pviz
Licenses: Artistic License 2.0
Synopsis: Peptide Annotation and Data Visualization using Gviz
Description:

Pviz adapts the Gviz package for protein sequences and data.

r-pd-rat230-2 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rat230.2
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name Rat230_2
Description:

Platform Design Info for The Manufacturer's Name Rat230_2.

r-pmm 1.42.0
Propagated dependencies: r-lme4@1.1-37
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pmm
Licenses: GPL 3
Synopsis: Parallel Mixed Model
Description:

The Parallel Mixed Model (PMM) approach is suitable for hit selection and cross-comparison of RNAi screens generated in experiments that are performed in parallel under several conditions. For example, we could think of the measurements or readouts from cells under RNAi knock-down, which are infected with several pathogens or which are grown from different cell lines.

r-pd-cyngene-1-1-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.cyngene.1.1.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix CynGene-1_1-st
Description:

Platform Design Info for Affymetrix CynGene-1_1-st.

r-pd-2006-07-18-mm8-refseq-promoter 0.99.3
Propagated dependencies: r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.2006.07.18.mm8.refseq.promoter
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter
Description:

Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter.

r-pd-margene-1-1-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.margene.1.1.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix MarGene-1_1-st
Description:

Platform Design Info for Affymetrix MarGene-1_1-st.

r-pd-cangene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.cangene.1.0.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix CanGene-1_0-st
Description:

Platform Design Info for Affymetrix CanGene-1_0-st.

r-pipecomp 1.20.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://doi.org/10.1186/s13059-020-02136-7
Licenses: GPL 2+ GPL 3+
Synopsis: pipeComp pipeline benchmarking framework
Description:

This package provides a simple framework to facilitate the comparison of pipelines involving various steps and parameters. The `pipelineDefinition` class represents pipelines as, minimally, a set of functions consecutively executed on the output of the previous one, and optionally accompanied by step-wise evaluation and aggregation functions. Given such an object, a set of alternative parameters/methods, and benchmark datasets, the `runPipeline` function then proceeds through all combinations arguments, avoiding recomputing the same step twice and compiling evaluations on the fly to avoid storing potentially large intermediate data.

r-pd-hg-u133b 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u133b
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name HG-U133B
Description:

Platform Design Info for The Manufacturer's Name HG-U133B.

r-pd-ragene-2-0-st 3.14.1
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ragene.2.0.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix RaGene-2_0-st
Description:

Platform Design Info for Affymetrix RaGene-2_0-st.

r-pd-raex-1-0-st-v1 3.14.1
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.raex.1.0.st.v1
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix RaEx-1_0-st-v1
Description:

Platform Design Info for Affymetrix RaEx-1_0-st-v1.

r-pwmenrich-hsapiens-background 4.44.0
Propagated dependencies: r-pwmenrich@4.46.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PWMEnrich.Hsapiens.background
Licenses: GPL 3
Synopsis: H. sapiens background for PWMEnrich
Description:

PWMEnrich pre-compiled background objects for H. sapiens (human) and MotifDb H. sapiens motifs.

r-peakpanther 1.24.0
Propagated dependencies: r-xml@3.99-0.18 r-svglite@2.2.1 r-stringr@1.5.1 r-shinycssloaders@1.1.0 r-shiny@1.10.0 r-scales@1.4.0 r-pracma@2.4.4 r-mzr@2.42.0 r-msnbase@2.34.1 r-minpack-lm@1.2-4 r-lubridate@1.9.4 r-gridextra@2.3 r-ggplot2@3.5.2 r-foreach@1.5.2 r-dt@0.33 r-doparallel@1.0.17 r-bslib@0.9.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/phenomecentre/peakPantheR
Licenses: GPL 3
Synopsis: Peak Picking and Annotation of High Resolution Experiments
Description:

An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files. It enables the real time annotation of multiple compounds in a single file, or the parallel annotation of multiple compounds in multiple files. A graphical user interface as well as command line functions will assist in assessing the quality of annotation and update fitting parameters until a satisfactory result is obtained.

r-pd-rusgene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rusgene.1.0.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix RUSGene-1_0-st
Description:

Platform Design Info for Affymetrix RUSGene-1_0-st.

r-parglms 1.42.0
Propagated dependencies: r-foreach@1.5.2 r-doparallel@1.0.17 r-biocgenerics@0.54.0 r-batchjobs@1.9
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/parglms
Licenses: Artistic License 2.0
Synopsis: support for parallelized estimation of GLMs/GEEs
Description:

This package provides support for parallelized estimation of GLMs/GEEs, catering for dispersed data.

r-pd-rcngene-1-0-st 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rcngene.1.0.st
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for Affymetrix RCnGene-1_0-st
Description:

Platform Design Info for Affymetrix RCnGene-1_0-st.

r-partheenmetadata-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.21.0 r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PartheenMetaData.db
Licenses: Artistic License 2.0
Synopsis: PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)
Description:

PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData) assembled using data from public repositories.

r-plpe 1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://www.korea.ac.kr/~stat2242/
Licenses: GPL 2+
Synopsis: Local Pooled Error Test for Differential Expression with Paired High-throughput Data
Description:

This package performs tests for paired high-throughput data.

r-pd-mg-u74c 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mg.u74c
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name MG_U74C
Description:

Platform Design Info for The Manufacturer's Name MG_U74C.

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Total results: 45109