Quality of life functions for interactive programming. Shortcuts for common combinations of functions or different default arguments. Not to be used in production level scripts, but useful for exploring and quickly manipulating data for easy analysis. Also imports a variety of packages to facilitate the installation of those imported packages on the host machine.
Just how spdl provides a nice and consistent interface to spdlog (via RcppSpdlog'), this package does so for spdlite', the lightweight header-only C++-20 logging library that provides a lighter version of spdlog'. This package is essentially a thin shim around it for a more compact interface from both R and C++.
An educational package providing intuitive functions for calculating confidence intervals (CI) for various statistical parameters. Designed primarily for teaching and learning about statistical inference (particularly confidence intervals). Offers user-friendly wrappers around established methods for proportions, means, and bootstrap-based intervals. Integrates seamlessly with Tidyverse workflows, making it ideal for classroom demonstrations and student exercises.
Estimation of reproduction numbers for disease outbreak, based on incidence data. The R0 package implements several documented methods. It is therefore possible to compare estimations according to the methods used. Depending on the methods requested by user, basic reproduction number (commonly denoted as R0) or real-time reproduction number (referred to as R(t)) is computed, along with a 95% Confidence Interval. Plotting outputs will give different graphs depending on the methods requested : basic reproductive number estimations will only show the epidemic curve (collected data) and an adjusted model, whereas real-time methods will also show the R(t) variations throughout the outbreak time period. Sensitivity analysis tools are also provided, and allow for investigating effects of varying Generation Time distribution or time window on estimates.
The twelvedata REST service offers access to current and historical data on stocks, standard as well as digital crypto currencies, and other financial assets covering a wide variety of course and time spans. See <https://twelvedata.com/> for details, to create an account, and to request an API key for free-but-capped access to the data.
RVVM is a RISC-V CPU and system software implementation written in C. It supports the entire RV64GC ISA, and it passes compliance tests for both RV64 and RV32. OpenSBI, U-Boot, and custom firmwares boot and execute properly. It is capable of running Linux, FreeBSD, OpenBSD, Haiku, and other OSes. Furthermore, it emulates a variety of hardware and peripherals.
This package provides a series of tools to compute and plot quantities related to classical and robust wavelet variance for time series and regular lattices. More details can be found, for example, in Serroukh, A., Walden, A.T., & Percival, D.B. (2000) <doi:10.2307/2669537> and Guerrier, S. & Molinari, R. (2016) <doi:10.48550/arXiv.1607.05858>.
This package provides tools for creating and visualizing statistical process control charts. Control charts are used for monitoring measurement processes, such as those occurring in manufacturing. The objective is to monitor the history of such processes and flag outlying measurements: out-of-control signals. Montgomery, D. (2009, ISBN:978-0-470-16992-6) contains an extensive discussion of the methodology.
This package provides a lightweight grammar of tables. Build a table by declaring a JSON spec (titles, spanners, row groups, footnotes, formatting functions, etc.); a tiny vanilla JavaScript runtime builds the HTML table from the spec on page load. No sass', no V8', no htmlwidgets â just base R and xfun ('htmltools is used only for the optional Shiny binding).
This package implements various win ratio methodologies for composite endpoints of death and non-fatal events, including the (stratified) proportional win-fractions (PW) regression models (Mao and Wang, 2020 <doi:10.1111/biom.13382>), (stratified) two-sample tests with possibly recurrent nonfatal event, and sample size calculation for standard win ratio test (Mao et al., 2021 <doi:10.1111/biom.13501>).
This package provides a new object oriented programming system designed to be a successor to S3 and S4. It includes formal class, generic, and method specification, and a limited form of multiple dispatch. It has been designed and implemented collaboratively by the R Consortium Object-Oriented Programming Working Group, which includes representatives from R-Core, Bioconductor, Posit/tidyverse, and the wider R community.
This package provides educational implementations of one- and two-sample Z tests, Student and Welch t tests, a paired t test, an F test for two variances, and Pearson chi-square tests for goodness of fit, independence, and homogeneity. Functions validate mutually exclusive raw-data and summary-statistics interfaces, return structured htest-compatible results, and optionally display step-by-step graphical explanations.
Bindings to FFmpeg <http://www.ffmpeg.org/> AV library for working with audio and video in R. Generates high quality video from images or R graphics with custom audio. Also offers high performance tools for reading raw audio, creating spectrograms', and converting between countless audio / video formats. This package interfaces directly to the C API and does not require any command line utilities.
This package contains Lioness Algorithm (LA) for finding optimal designs over continuous design space, optimal Latin hypercube designs, and optimal order-of-addition designs. LA is a brand new nature-inspired meta-heuristic optimization algorithm. Detailed methodologies of LA and its implementation on numerical simulations can be found at Hongzhi Wang, Qian Xiao and Abhyuday Mandal (2021) <doi:10.48550/arXiv.2010.09154>.
This package implements the "shrinkage t" statistic introduced in Opgen-Rhein and Strimmer (2007) <DOI:10.2202/1544-6115.1252> and a shrinkage estimate of the "correlation-adjusted t-score" (CAT score) described in Zuber and Strimmer (2009) <DOI:10.1093/bioinformatics/btp460>. It also offers a convenient interface to a number of other regularized t-statistics commonly employed in high-dimensional case-control studies.
Infer causation from observational data through pattern causality analysis (PC), with original algorithm for time series data from Stavroglou et al. (2020) <doi:10.1073/pnas.1918269117>, as well as methodological extensions for spatial cross-sectional data introduced by Zhang & Wang (2025) <doi:10.1080/13658816.2025.2581207>, together with a systematic description proposed in Lyu et al. (2026) <doi:10.1016/j.compenvurbsys.2026.102435>.
An enhanced implementation of Whittaker-Henderson smoothing for the graduation of one-dimensional and two-dimensional actuarial tables used to quantify Life Insurance risks. WH is based on the methods described in Biessy (2025) <doi:10.48550/arXiv.2306.06932>. Among other features, it generalizes the original smoothing algorithm to maximum likelihood estimation, automatically selects the smoothing parameter(s) and extrapolates beyond the range of data.
This package provides R bindings to the funz-fz Python package using reticulate'. The fz framework wraps arbitrary simulation codes to run parameter sweeps, design-of-experiments studies, and iterative algorithm-driven analyses by substituting variable placeholders in text input files and collecting outputs into data frames. Calculators can run locally (shell), over SSH, or on SLURM clusters. See <https://github.com/Funz/fz> for the underlying framework.
The computation of quadratic form (QF) distributions is often not trivial and it requires numerical routines. The package contains functions aimed at evaluating the exact distribution of quadratic forms (QFs) and ratios of QFs. In particular, we propose to evaluate density, quantile and distribution functions of positive definite QFs and ratio of independent positive QFs by means of an algorithm based on the numerical inversion of Mellin transforms.
This package provides a minimal R and C++ API for parsing well-known binary and well-known text representation of geometries to and from R-native formats. Well-known binary is compact and fast to parse; well-known text is human-readable and is useful for writing tests. These formats are only useful in R if the information they contain can be accessed in R, for which high-performance functions are provided here.
Comprehensive data analysis software, and the name "cg" stands for "compare groups." Its genesis and evolution are driven by common needs to compare administrations, conditions, etc. in medicine research and development. The current version provides comparisons of unpaired samples, i.e. a linear model with one factor of at least two levels. It also provides comparisons of two paired samples. Good data graphs, modern statistical methods, and useful displays of results are emphasized.
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides a user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95% credibility interval estimates for expression levels. For visualization, it can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate.
Build display tables from tabular data with an easy-to-use set of functions. With its progressive approach, we can construct display tables with a cohesive set of table parts. Table values can be formatted using any of the included formatting functions. Footnotes and cell styles can be precisely added through a location targeting system. The way in which gt handles things for you means that you don't often have to worry about the fine details.
This package implements the split-fit-evaluate-assess workflow from Hastie, Tibshirani, and Friedman (2009, ISBN:978-0-387-84857-0) "The Elements of Statistical Learning", Chapter 7. Provides three-way data splitting with automatic stratification, mandatory seeds for reproducibility, automatic data type handling, and 10 algorithms out of the box. Uses Rust backend for cross-language deterministic splitting. Designed for tabular supervised learning with minimal ceremony. Polyglot parity with the Python mlw package on PyPI'.