Use A Resampling-Based Empirical Bayes Approach to Assess Differential Expression in Two-Color Microarrays and RNA-Seq data sets.

Calculate generalized R-squared, partial R-squared, and partial correlation coefficients for generalized linear (mixed) models (including quasi models with well defined variance functions).

This package provides common base and stats methods for rle objects, aiming to make it possible to treat them transparently as vectors.

RipIT is used to extract audio from CDs.

Finds associations between two human genomic datasets.

RtOSC is a realtime safe library for handling OSC messages.

This package provides a solver for generalized estimation equations.

RT provides a framework for writing regression test suites.

This package provides a CLI tool for the roper library.

This package provides tools for Bayesian integrated analysis of Affymetrix GeneChips.

This package provides a variety of simple fish stock assessment methods.

This package implements multiple imputation for multivariate panel or clustered data.

This package provides basic classes and methods for Natural Language Processing.

Rqc is an optimized tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

RAxML is a tool for phylogenetic analysis and post-analysis of large phylogenies.

This package provides power analysis functions along the lines of Cohen (1988).

This package lets you generate random or human readable and pronounceable identifiers.

This package provides tools for categorical data analysis with complete or missing responses.

This package offers an interactive function for the detection of breakpoints in series.

This package provides functions and data to construct technical trading rules with R.

This package provides a friendly interface for the construction of regular expressions. Regular expressions are a very powerful feature, however they are often difficult to interpret. Rex allows you to build complex regular expressions from human readable expressions

This package provides tools for analysis of ChIP-seq and other functional sequencing data.

This package provides David Scott's ASH routines ported from S-PLUS to R.

This package provides a comprehensive collection for structural multivariate function estimation using smoothing splines.