Somoclu is a massively parallel implementation of self-organizing maps. It exploits multicore CPUs and it can be accelerated by CUDA. The topology of the map can be planar or toroid and the grid of neurons can be rectangular or hexagonal . Details refer to (Peter Wittek, et al (2017)) <doi:10.18637/jss.v078.i09>.

An implementation of the RaCE-NMA (Rank-Clustered Estimation for Network Meta-Analysis) model for post-hoc clustering of treatments or interventions by rank in network meta-analysis data. Functions for model estimation, assessment, and displaying results are provided. For more details, see Pearce and Zhou (2025) <doi:10.1017/rsm.2025.10049>.

Regularized (polychotomous) logistic regression by Gibbs sampling. The package implements subtly different MCMC schemes with varying efficiency depending on the data type (binary v. binomial, say) and the desired estimator (regularized maximum likelihood, or Bayesian maximum a posteriori/posterior mean, etc.) through a unified interface. For details, see Gramacy & Polson (2012 <doi:10.1214/12-BA719>).

Rubber Band is a library and utility program that permits changing the tempo and pitch of an audio recording independently of one another.

This package provides a package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST server.

This package provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

This package is an implementation of the Adaptively Weighted Fisher's method, including fast p-value computing, variability index, and meta-pattern.

ringbuffer is a library containing a ringbuffer. It is lock-free (using atomics only), and allows multiple readers, but only one writer.

This is a package for text mining for word processing and sentiment analysis using dplyr, ggplot2, and other Tidy tools.

Need to generate random numbers? How about random game boards? Or random positions in 3D space? This is the package for you!

Dhall.rb is a Ruby implementation of the Dhall configuration language. Dhall is a memory safe and non-Turing-complete configuration language.

Faker is a port of Data::Faker from Perl. It is used to easily generate fake data: names, addresses, phone numbers, etc.

This Ruby library provides an experimental logging system that tries to make logging more flexible and more consumable than plain-text logging.

This package provides tools for meta-analysis in the presence of hierarchical (and/or sampling) dependence, including with gene expression studies.

This package provides functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering.

Publicly available COVID-19 data for Norway cleaned and merged into one dataset, including PCR confirmed cases, tests, hospitalisation and vaccination.

Plots the coefficients from model objects. This very quickly shows the user the point estimates and confidence intervals for fitted models.

Use machine learning algorithms and advanced geographic information system tools to build Species Distribution Modeling in a extensible and modern fashion.

Perform data quality assessment ('DQA') of electronic health records ('EHR'). Publication: Kapsner et al. (2021) <doi:10.1055/s-0041-1733847>.

Edit and validate taxonomic data in compliance with Darwin Core standards (Darwin Core Taxon class <https://dwc.tdwg.org/terms/#taxon>).

This package provides tools to study lineages, grandparenthood, loss of close relatives, kinship networks and other topics in multi-generation populations.

For including external figures into an assembled patchwork. This enables the creation of more complex figures that include images alongside plots.

We facilitate the analysis of full factorial mating designs with mixed-effects models. The package contains six vignettes containing detailed examples.

This package provides methods for matrix factorization based on Wang and Stephens (2021) <https://jmlr.org/papers/v22/20-589.html>.