This package provides tools to deploy TensorFlow <https://www.tensorflow.org/> models across multiple services. Currently, it provides a local server for testing cloudml compatible services.

This package provides a consistent API to pull United States Department of Agriculture census and survey data from the National Agricultural Statistics Service (NASS) QuickStats service.

Estimation of the SF-ACE, a Causal Inference estimand proposed in the paper "The Subtype-Free Average Causal Effect For Heterogeneous Disease Etiology" (soon on arXiv).

This package provides a set of basic tools to transform functions into functions with input validation checks, in a manner suitable for both programmatic and interactive use.

Fetch statistics about views, downloads and data volume from Zenodo deposits. The package collects a Zenodo (<https://zenodo.org>) deposit file information, respecting the website scrapping policies.

This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.

This is a collection of utility functions that allow to perform exploration of and calculations to RNA sequencing data, in a modular, pipe-friendly and tidy fashion.

This package provides classes and statistical methods for large single-nucleotide polymorphism (SNP) association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

Phangorn is a package for phylogenetic analysis in R. It supports estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation.

This package provides a ggplot2 extension for easy plotting of half-half geom combinations. Think half boxplot and half jitterplot, or half violinplot and half dotplot.

This package provides common functionality for the dynverse packages. dynverse is created to support the development, execution, and benchmarking of trajectory inference methods.

This package provides a collection of functions to help in the analysis of right-censored survival data. These extend the methods available in the survival package.

The R kernel for the Jupyter environment executes R code which the front-end (Jupyter Notebook or other front-ends) submits to the kernel via the network.

The goal of this script is to provide a fast and lightweight script to enable responsive web designs in browsers that don't support CSS3 Media Queries.

Rosegarden is a music composition and editing environment based around a MIDI sequencer that features a rich understanding of music notation and includes basic support for digital audio.

This library provides Ruby qFFI bindings to the libsass library. This enables rendering SASS from Ruby code.

Building interactive web applications with R is incredibly easy with shiny'. Behind the scenes, shiny builds a reactive graph that can quickly become intertwined and difficult to debug. reactlog (Schloerke 2019) <doi:10.5281/zenodo.2591517> provides a visual insight into that black box of shiny reactivity by constructing a directed dependency graph of the application's reactive state at any time point in a reactive recording.

This package creates a muti-graph web page which allows the interactive exploration of differential expression results. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.

Determines effective sample size of a parametric prior distribution in Bayesian models. For a web-based Shiny application related to this package, see <https://implement.shinyapps.io/bayesess/>.

R functions to read EURING data and analyse re-encounter data of birds marked by metal rings. For a tutorial, go to <doi:10.1080/03078698.2014.933053>.

This package provides a set of common functions to be used for displaying messages, checking variables, finding absolute paths, starting applications, etc. More functions will be added later.

Implementation of Hurst exponent estimators based on complex-valued lifting wavelet energy from Knight, M. I and Nunes, M. A. (2018) <doi:10.1007/s11222-018-9820-8>.

Shiny app for creating interactive consort flow diagrams and other types of flow diagrams, see Moher, Schulz and Altman (2001) <doi:10.1016/S0140-6736(00)04337-3>.

This package provides iterators for combinations, permutations, subsets, and Cartesian product, which allow one to go through all elements without creating a huge set of all possible values.