This package offers a flexible statistical simulator for scRNA-seq data. It can generate data that captures gene correlation. Additionally, it allows for varying the number of cells and sequencing depth.

This package provides building blocks for allowing HTML widgets to communicate with each other, with Shiny or without (i.e., static .html files). It currently supports linked brushing and filtering.

Random-intercept accelerated failure time (AFT) model utilizing Bayesian additive regression trees (BART) for drawing causal inferences about multiple treatments while accounting for the multilevel survival data structure. It also includes an interpretable sensitivity analysis approach to evaluate how the drawn causal conclusions might be altered in response to the potential magnitude of departure from the no unmeasured confounding assumption.This package implements the methods described by Hu et al. (2022) <doi:10.1002/sim.9548>.

Extends package arules with various visualization techniques for association rules and itemsets. The package also includes several interactive visualizations for rule exploration. Michael Hahsler (2017) <doi:10.32614/RJ-2017-047>.

This package provides a set of functions for interacting with the DigitalOcean API <https://www.digitalocean.com/>, including creating images, destroying them, rebooting, getting details on regions, and available images.

Facilitates local polynomial regression for state dependent covariates in state-space models. The functionality can also be used from C++ based model builder tools such as Rcpp'/'inline', TMB', or JAGS'.

Estimate mixture cure models with subgroup survival probabilities as auxiliary information. A reference of the underlying methods is Jie Ding, Jialiang Li and Xiaoguang Wang (2024) <doi:10.1093/jrsssc/qlad106>.

Transfer any date type to ISO standard. Package recognizes dates in given data frame and transform to ISO format. Only one date format can be applied within one data frame column.

Compressed spatial vector data originally from <https://dawadocs.dataforsyningen.dk/> saved as Simple Features, SF, objects with data on population, age and gender from Statistics Denmark <https://www.dst.dk/da/>.

This package provides functions for selecting attributes from a given dataset. Attribute subset selection is the process of identifying and removing as much of the irrelevant and redundant information as possible.

Flipbooks present code step-by-step and side-by-side with its output. flipbookr helps creators build flipbooks efficiently because code pipelines are automatically parsed and prepped for presentation as flipbooks.

This package provides tools for describing and analysing free sorting data. Main methods are computation of consensus partition and factorial analysis of the dissimilarity matrix between stimuli (using multidimensional scaling approach).

Reconstruction of muscle fibers from image stacks using textural analysis. Includes functions for tracking, smoothing, cleaning, plotting and exporting muscle fibers. Also calculates basic fiber properties (e.g., length and curvature).

This package provides a tool to simulate salmon metapopulations and apply financial portfolio optimization concepts. The package accompanies the paper Anderson et al. (2015) <doi:10.1101/2022.03.24.485545>.

This package implements permutation tests for any test statistic and randomization scheme and constructs associated confidence intervals as described in Glazer and Stark (2024) <doi:10.48550/arXiv.2405.05238>.

Implementation of the Pearson distribution system, including full support for the (d,p,q,r)-family of functions for probability distributions and fitting via method of moments and maximum likelihood method.

This package provides additional functions for evaluating predictive models, including plotting calibration curves and model-based Receiver Operating Characteristic (mROC) based on Sadatsafavi et al (2021) <arXiv:2003.00316>.

This package provides methods to determine, smooth and plot quantile periodograms for univariate and multivariate time series. See Kley (2016) <doi:10.18637/jss.v070.i03> for a description and tutorial.

Non-parametric test, originally proposed by Stute (1997) <https://www.jstor.org/stable/2242560>, that the expectation of a dependent variable Y given an independent variable D is linear in D.

Standard RGB spaces included are sRGB, Adobe RGB, ProPhoto RGB, BT.709, and others. User-defined RGB spaces are also possible. There is partial support for ACES Color workflows.

Perform a probabilistic linkage of two data files using a scaling procedure using the methods described in Goldstein, H., Harron, K. and Cortina-Borja, M. (2017) <doi:10.1002/sim.7287>.

We visualize the standard deviation of a data set as the size of a prism whose volume equals the total volume of several prisms made from the Empirical Cumulative Distribution Function.

Collection of conversion, analytical, geodesic, mapping, and plotting functions. Used to support packages and code written by researchers at the Southwest Fisheries Science Center of the National Oceanic and Atmospheric Administration.

Offers a fast algorithm for fitting solution paths of sparse SVM models with lasso or elastic-net regularization. Reference: Congrui Yi and Jian Huang (2017) <doi:10.1080/10618600.2016.1256816>.