Integrates clipboard copied data in R Studio, loads and installs libraries within a R script and returns all valid arguments of a selected function.

It provides generic methods that are used by more than one package, avoiding conflicts. This package will be imported by tidySingleCellExperiment and tidyseurat'.

Save the output of statistical tests in an organized file that can be shared with others or used to report statistics in scientific papers.

See what is going on under the hood of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.

The biobtreeR package provides an interface to biobtree, a tool which covers large sets of bioinformatics datasets and allows search and chain mappings functionalities.

This light-weight package helps you track and visualize the progress of parallel versions of vectorized R functions of the mc*apply family.

This package provides tools for functional enrichment analysis, gene identifier conversion and mapping homologous genes across related organisms via the g:Profiler toolkit.

This package provides methods to create, store, access, and manipulate large matrices. Matrices are allocated to shared memory and may use memory-mapped files.

This is a package for constructing minimum-cost regular spanning subgraph as part of a non-parametric two-sample test for equality of distribution.

This package provides a system for generating extendable and customizable heatmaps for exploring complex datasets, including big data and data with multiple data types.

This package provides functionality to create pretty word clouds, visualize differences and similarity between documents, and avoid over-plotting in scatter plots with text.

This package provides an R Shiny application to create visual abstracts for original research. A variety of user defined options and formatting are included.

This package provides a consistent, flexible and easy to use tool to parse and convert strings into cases like snake or camel among others.

An implementation of Relax NG schema validation written in Common Lisp, including support for compact syntax, DTD Compatibility, and the XSD type library.

This package provides a simple block-driven assertion library for both testing and for production code that attempts to make test definitions more readable.

This package provides a programmatic interface to FishBase', re-written based on an accompanying RESTful API. Access tables describing over 30,000 species of fish, their biology, ecology, morphology, and more. This package also supports experimental access to SeaLifeBase data, which contains nearly 200,000 species records for all types of aquatic life not covered by FishBase.'.

Reads river network shape files and computes network distances. Also included are a variety of computation and graphical tools designed for fisheries telemetry research, such as minimum home range, kernel density estimation, and clustering analysis using empirical k-functions with a bootstrap envelope. Tools are also provided for editing the river networks, meaning there is no reliance on external software.

This package provides an RNA-seq workflow for differential transcript usage (DTU) following Salmon quantification. This workflow performs a DTU analysis on simulated data. It also shows how to use stageR to perform two-stage testing of DTU, a statistical framework to screen at the gene level and then confirm which transcripts within the significant genes show evidence of DTU.

This package provides an interface with the Wildbook mark-recapture ecological database framework. It helps users to pull data from the Wildbook framework and format data for further analysis with mark-recapture applications like Program MARK (which can be accessed via the RMark package in R'). Further information on the Wildbook framework is available at: <http://www.wildbook.org/doku.php>.

Data sets are often corrupted by outliers. When data are multivariate outliers can be classified as case-wise or cell-wise. The latters are particularly challenge to handle. We implement a robust estimation procedure for Seemingly Unrelated Regression Models which is able to cope well with both type of outliers. Giovanni Saraceno, Fatemah Alqallaf, Claudio Agostinelli (2021) <arXiv:2107.00975>.

Opens a user's preferred text editor so they can edit data inline and saves the result to a String. Useful for interactive CLI applications.

Simulate clinical trials for diagnostic test devices and evaluate the operating characteristics under an adaptive design with futility assessment determined via the posterior predictive probabilities.

This package provides a light-weight object-oriented system with python'-like syntax which supports multiple inheritances and incorporates a python'-like method resolution order.

This package provides a wrapper around the COVID Tracking Project API <https://covidtracking.com/api/> providing data on cases of COVID-19 in the US.