Base package for Neuroconductor', which includes many helper functions that interact with objects of class nifti', implemented by package oro.nifti', for reading/writing and also other manipulation functions.

An integrated R interface to the Overture API (<https://docs.overturemaps.org/>). Allows R users to return Overture data as dbplyr data frames or materialized sf spatial data frames.

This package provides functions which can be used to support the Multicriteria Decision Analysis (MCDA) process involving multiple criteria, by PROMETHEE (Preference Ranking Organization METHod for Enrichment of Evaluations).

An interactive document for preprocessing the dataset using rmarkdown and shiny packages. Runtime examples are provided in the package function as well as at <https://analyticmodels.shinyapps.io/PREPShiny/>.

This package implements the methods described in the paper, Witten (2011) Classification and Clustering of Sequencing Data using a Poisson Model, Annals of Applied Statistics 5(4) 2493-2518.

Set of functions to make the processing and analysis of surveys easier : interactive shiny apps and addins for data recoding, contingency tables, dataset metadata handling, and several convenience functions.

The NOT functions, R tricks and a compilation of some simple quick plus often used R codes to improve your scripts. Improve the quality and reproducibility of R scripts.

This package implements tic-tac-toe game to play on console, either with human or AI players. Various levels of AI players are trained through the Q-learning algorithm.

This package provides a suite of analytical functionalities to process and analyze visual meteor observations from the Visual Meteor Database of the International Meteor Organization <https://www.imo.net/>.

The polyester package simulates RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

This package provides a Wrapper around the SVDLIBC library for (truncated) singular value decomposition of a sparse matrix. Currently, only sparse real matrices in Matrix package format are supported.

This package provides an interface to the rich display capabilities of Jupyter front-ends (e.g. Jupyter Notebook). It is designed to be used from a running IRkernel session.

This package provides traits which define the functionality of block ciphers and stream ciphers. See RustCrypto/block-ciphers and RustCrypto/stream-ciphers for algorithm implementations which use these traits.

This package provides traits which define the functionality of block ciphers and stream ciphers. See RustCrypto/block-ciphers and RustCrypto/stream-ciphers for algorithm implementations which use these traits.

This package provides traits which define the functionality of block ciphers and stream ciphers. See RustCrypto/block-ciphers and RustCrypto/stream-ciphers for algorithm implementations which use these traits.

This package provides a utility library intended at providing configurable reader macros for common tasks such as accessors, hash-tables, sets, uiop:run-program, arrays and a few others.

This package provides tests and assertions to perform frequent argument checks. A substantial part of the package was written in C to minimize any worries about execution time overhead.

This package provides the functionality to set configuration options on a per-package basis. Options set by a given package only apply to that package, other packages are unaffected.

Detecting outliers using robust methods, i.e. the Median Absolute Deviation (MAD) for univariate outliers; Leys, Ley, Klein, Bernard, & Licata (2013) <doi:10.1016/j.jesp.2013.03.013> and the Mahalanobis-Minimum Covariance Determinant (MMCD) for multivariate outliers; Leys, C., Klein, O., Dominicy, Y. & Ley, C. (2018) <doi:10.1016/j.jesp.2017.09.011>. There is also the more known but less robust Mahalanobis distance method, only for comparison purposes.

Process phylogenetic trees with tropical support vector machine and principal component analysis defined with tropical geometry. Details about tropical support vector machine are available in : Tang, X., Wang, H. & Yoshida, R. (2020) <arXiv:2003.00677>. Details about tropical principle component analysis are available in : Page, R., Yoshida, R. & Zhang L. (2020) <doi:10.1093/bioinformatics/btaa564> and Yoshida, R., Zhang, L. & Zhang, X. (2019) <doi:10.1007/s11538-018-0493-4>.

Implemented fast and memory-efficient Notch-filter, Welch-periodogram, discrete wavelet spectrogram for minutes of high-resolution signals, fast 3D convolution, image registration, 3D mesh manipulation; providing fundamental toolbox for intracranial Electroencephalography (iEEG) pipelines. Documentation and examples about RAVE project are provided at <https://rave.wiki>, and the paper by John F. Magnotti, Zhengjia Wang, Michael S. Beauchamp (2020) <doi:10.1016/j.neuroimage.2020.117341>; see citation("ravetools") for details.

Infer log-linear Poisson Graphical Model with an auxiliary data set. Hot-deck multiple imputation method is used to improve the reliability of the inference with an auxiliary dataset. Standard log-linear Poisson graphical model can also be used for the inference and the Stability Approach for Regularization Selection (StARS) is implemented to drive the selection of the regularization parameter. The method is fully described in <doi:10.1093/bioinformatics/btx819>.

Computation of A (pedigree), G (genomic-base), and H (A corrected by G) relationship matrices for diploid and autopolyploid species. Several methods are implemented considering additive and non-additive models.

Automates regression testing of package allelematch'. Over 2500 tests covers all functions in allelematch', reproduces the examples from the documentation and includes negative tests. The implementation is based on testthat'.