This package provides tools to test correlation between gene expression and phenotype in a way that is efficient, structured, fast and scalable. GSEA is also provided.

This package provides functions to perform global (genome-wide) and local admixture inference from bi- and multi-allelic marker dosages (discrete or continuous) in polyploid species.

Flexible framework for trait-based simulation of community assembly, where components could be replaced by user-defined function and that allows variation of traits within species.

The cov.nnve() function implements robust covariance estimation by the nearest neighbor variance estimation (NNVE) method of Wang and Raftery (2002) <DOI:10.1198/016214502388618780>.

Extends the functionality of base R lists and provides specialized data structures deque', set', dict', and dict.table', the latter to extend the data.table package.

This package implements column lineage visualizations using React Flow for dplyr and dbplyr pipelines. Provides a tidyverse-style interface for tracking data transformations through pipeline operations.

Compares two dataframes with a common key and returns the delta records. The package will return three dataframes that contain the added, changed, and deleted records.

Tests the equality of two covariance matrices, used in paper "Two sample tests for high dimensional covariance matrices." Li and Chen (2012) <arXiv:1206.0917>.

Generate SPSS'/'SAS styled frequency tables. Frequency tables are generated with variable and value label attributes where applicable with optional html output to quickly examine datasets.

R interface to access the Vocabularies REST API of the ICES (International Council for the Exploration of the Sea) Vocabularies database <https://vocab.ices.dk/services/>.

This package provides a flexible approach, inspired by cosinor regression, for differential analysis of rhythmic transcriptome data. See Singer and Hughey (2018) <doi:10.1177/0748730418813785>.

Crabs in the English channel, deer skulls, English monarchs, half-caste Manga characters, Jamaican cities, Shakespeare's The Tempest, drugged up cyclists and sexually transmitted diseases.

Data sets exemplifying statistical methods, and some facilitatory utility functions used in ``Analyzing Linguistic Data: A practical introduction to statistics using R'', Cambridge University Press, 2008.

Interfaces and methods for variable selection in Partial Least Squares. The methods include filter methods, wrapper methods and embedded methods. Both regression and classification is supported.

Annotate plots with legends for continuous variables and colour spectra using the base graphics plotting tools; and manipulate irregular polygons. Includes palettes for colour-blind viewers.

Run Queries against the API of Piwik Pro <https://developers.piwik.pro/en/latest/custom_reports/http_api/http_api.html>. The result is a tibble.

This package provides ggplot2 graphics for analysing time series data. It aims to fit into the tidyverse and grammar of graphics framework for handling temporal data.

Extended Susceptible-Exposed-Infected-Recovery Model for handling high false negative rate and symptom based administration of diagnostic tests. <doi:10.1101/2020.09.24.20200238>.

Efficiently estimates treatment effects in settings with randomized staggered rollouts, using tools proposed by Roth and Sant'Anna (2023) <doi:10.48550/arXiv.2102.01291>.

Spectra viewer, organizer, data preparation and property blocks from within R or stand-alone. Binary (application) part is installed separately using spnInstallApp() from spectrino package.

This package provides a test for the existence of a subgroup with enhanced treatment effect. And, a sample size calculation procedure for the subgroup detection test.

This package performs multiple testing corrections that take specific structure of hypotheses into account, as described in Sankaran & Holmes (2014) <doi:10.18637/jss.v059.i13>.

Simplify reporting many tables by creating tibbles of tables. With tabtibble', a tibble of tables is created with captions and automatic printing using knit_print()'.

This package provides functions to access historical and real-time national hydrometric data from Water Survey of Canada data sources and then applies tidy data principles.