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r-serpstatr 0.3.0
Propagated dependencies: r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://serpstat.com/api/
Licenses: Expat
Synopsis: 'Serpstat' API Wrapper
Description:

The primary goal of Serpstat API <https://serpstat.com/api/> is to reduce manual SEO (search engine optimization) and PPC (pay-per-click) tasks. You can automate your keywords research or competitors analysis with this API wrapper.

r-shinylogs 0.2.1
Propagated dependencies: r-shiny@1.8.1 r-nanotime@0.3.11 r-jsonlite@1.8.9 r-htmltools@0.5.8.1 r-digest@0.6.37 r-data-table@1.16.2 r-bit64@4.5.2 r-anytime@0.3.9
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/dreamRs/shinylogs
Licenses: GPL 3
Synopsis: Record Everything that Happens in a 'Shiny' Application
Description:

Track and record the use of applications and the user's interactions with Shiny inputs. Allows to trace the inputs with which the user interacts, the outputs generated, as well as the errors displayed in the interface.

r-slideview 0.2.0
Propagated dependencies: r-viridislite@0.4.2 r-raster@3.6-30 r-lattice@0.22-6 r-htmlwidgets@1.6.4 r-htmltools@0.5.8.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://r-spatial.github.io/slideview/
Licenses: Expat
Synopsis: Compare Raster Images Side by Side with a Slider
Description:

Create a side-by-side view of raster(image)s with an interactive slider to switch between regions of the images. This can be especially useful for image comparison of the same region at different time stamps.

r-tr-iatgen 1.1.0
Propagated dependencies: r-shiny@1.8.1
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/iatgen/tr.iatgen
Licenses: Expat
Synopsis: Translate 'iatgen' Generated QSF Files
Description:

Automates translating the instructions of iatgen generated qsf (Qualtrics survey files) to other languages using either officially supported or user-supplied translations (for tutorial see Santos et al., 2023 <doi:10.17504/protocols.io.kxygx34jdg8j/v1>).

r-vol2birdr 1.0.9
Dependencies: zlib@1.3 proj@9.3.1 openssl@3.0.8 openssh@9.9p2 hdf5@1.14.3 gsl@2.8 curl@8.6.0
Propagated dependencies: r-withr@3.0.2 r-rlang@1.1.4 r-rcppgsl@0.3.13 r-rcpp@1.0.13-1 r-pkgbuild@1.4.5 r-assertthat@0.2.1
Channel: guix-cran
Location: guix-cran/packages/v.scm (guix-cran packages v)
Home page: https://github.com/adokter/vol2birdR/
Licenses: LGPL 3+
Synopsis: Vertical Profiles of Biological Signals in Weather Radar Data
Description:

R implementation of the vol2bird software for generating vertical profiles of birds and other biological signals in weather radar data. See Dokter et al. (2011) <doi:10.1098/rsif.2010.0116> for a paper describing the methodology.

r-cnvranger 1.22.0
Propagated dependencies: r-summarizedexperiment@1.36.0 r-snprelate@1.40.0 r-s4vectors@0.44.0 r-reshape2@1.4.4 r-rappdirs@0.3.3 r-raggedexperiment@1.30.0 r-qqman@0.1.9 r-plyr@1.8.9 r-limma@3.62.1 r-lattice@0.22-6 r-iranges@2.40.0 r-genomicranges@1.58.0 r-genomeinfodb@1.42.0 r-gdsfmt@1.42.0 r-gdsarray@1.26.0 r-edger@4.4.0 r-data-table@1.16.2 r-biocparallel@1.40.0 r-biocgenerics@0.52.0
Channel: guix-bioc
Location: guix-bioc/packages/c.scm (guix-bioc packages c)
Home page: https://bioconductor.org/packages/CNVRanger
Licenses: Artistic License 2.0
Synopsis: Summarization and expression/phenotype association of CNV ranges
Description:

The CNVRanger package implements a comprehensive tool suite for CNV analysis. This includes functionality for summarizing individual CNV calls across a population, assessing overlap with functional genomic regions, and association analysis with gene expression and quantitative phenotypes.

r-dexmadata 1.14.0
Propagated dependencies: r-biobase@2.66.0
Channel: guix-bioc
Location: guix-bioc/packages/d.scm (guix-bioc packages d)
Home page: https://bioconductor.org/packages/DExMAdata
Licenses: GPL 2
Synopsis: Data package for DExMA package
Description:

Data objects needed to allSameID() function of DExMA package. There are also some objects that are necessary to be able to apply the examples of the DExMA package, which illustrate package functionality.

r-flowplots 1.54.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowPlots
Licenses: Artistic License 2.0
Synopsis: flowPlots: analysis plots and data class for gated flow cytometry data
Description:

Graphical displays with embedded statistical tests for gated ICS flow cytometry data, and a data class which stores "stacked" data and has methods for computing summary measures on stacked data, such as marginal and polyfunctional degree data.

r-singscore 1.26.0
Propagated dependencies: r-biobase@2.66.0 r-biocparallel@1.40.0 r-edger@4.4.0 r-ggplot2@3.5.1 r-ggrepel@0.9.6 r-gseabase@1.68.0 r-magrittr@2.0.3 r-matrixstats@1.4.1 r-plotly@4.10.4 r-plyr@1.8.9 r-rcolorbrewer@1.1-3 r-reshape@0.8.9 r-reshape2@1.4.4 r-s4vectors@0.44.0 r-summarizedexperiment@1.36.0 r-tidyr@1.3.1
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://davislaboratory.github.io/singscore/
Licenses: GPL 3
Synopsis: Rank-based single-sample gene set scoring method
Description:

This package provides a simple single-sample gene signature scoring method that uses rank-based statistics to analyze the sample's gene expression profile. It scores the expression activities of gene sets at a single-sample level.

rust-multer 2.1.0
Channel: guix
Location: gnu/packages/crates-io.scm (gnu packages crates-io)
Home page: https://github.com/rwf2/multer-rs
Licenses: Expat
Synopsis: Async parser for @code{multipart/form-data} content-type in Rust
Description:

An async parser for multipart/form-data content-type in Rust.

It accepts a Stream of Bytes as a source, so that it can be plugged into any async Rust environment e.g. any async server.

rust-multer 3.0.0
Channel: guix
Location: gnu/packages/crates-io.scm (gnu packages crates-io)
Home page: https://github.com/rwf2/multer-rs
Licenses: Expat
Synopsis: Async parser for @code{multipart/form-data} content-type in Rust
Description:

An async parser for multipart/form-data content-type in Rust.

It accepts a Stream of Bytes as a source, so that it can be plugged into any async Rust environment e.g. any async server.

python-rope 1.13.0
Propagated dependencies: python-pytoolconfig@1.3.1
Channel: guix
Location: gnu/packages/python-xyz.scm (gnu packages python-xyz)
Home page: https://github.com/python-rope/rope
Licenses: LGPL 3+
Synopsis: Refactoring library for Python
Description:

Rope is a refactoring library for Python. It facilitates the renaming, moving and extracting of attributes, functions, modules, fields and parameters in Python source code. These refactorings can also be applied to occurrences in strings and comments.

python-rpy2 3.5.17
Dependencies: icu4c@73.1 libdeflate@1.19 pcre@8.45 python-numpy@1.24.4 readline@8.1.2 r-minimal@4.4.2 r-survival@3.7-0 r-ggplot2@3.5.1 r-rsqlite@2.3.7 r-dplyr@1.1.4 r-dbplyr@2.5.0 zlib@1.3
Propagated dependencies: python-cffi@1.17.1 python-six@1.16.0 python-jinja2@3.1.2 python-numpy@1.24.4 python-pandas@2.2.3 python-pytz@2023.3.post1 python-ipython@8.29.0 python-tzlocal@5.2
Channel: guix
Location: gnu/packages/statistics.scm (gnu packages statistics)
Home page: https://rpy2.github.io
Licenses: MPL 2.0 GPL 2+ LGPL 2.1+
Synopsis: Python interface to the R language
Description:

rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R from Python, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions.

r-rrcov3way 0.5-0
Propagated dependencies: r-threeway@1.1.3 r-rrcov@1.7-6 r-robustbase@0.99-4-1 r-pracma@2.4.4 r-nnls@1.6
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/valentint/rrcov3way
Licenses: GPL 3+
Synopsis: Robust Methods for Multiway Data Analysis, Applicable also for Compositional Data
Description:

This package provides methods for multiway data analysis by means of Parafac and Tucker 3 models. Robust versions (Engelen and Hubert (2011) <doi:10.1016/j.aca.2011.04.043>) and versions for compositional data are also provided (Gallo (2015) <doi:10.1080/03610926.2013.798664>, Di Palma et al. (2018) <doi:10.1080/02664763.2017.1381669>). Several optimization methods alternative to ALS are available (Simonacci and Gallo (2019) <doi:10.1016/j.chemolab.2019.103822>, Simonacci and Gallo (2020) <doi:10.1007/s00500-019-04320-9>).

r-rviennacl 1.7.1.8
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: http://github.com/cdeterman/RViennaCL
Licenses: GPL 3
Synopsis: 'ViennaCL' C++ Header Files
Description:

ViennaCL is a free open-source linear algebra library for computations on many-core architectures (GPUs, MIC) and multi-core CPUs. The library is written in C++ and supports CUDA', OpenCL', and OpenMP (including switches at runtime). I have placed these libraries in this package as a more efficient distribution system for CRAN. The idea is that you can write a package that depends on the ViennaCL library and yet you do not need to distribute a copy of this code with your package.

r-ramlegacy 0.2.0
Propagated dependencies: r-readxl@1.4.3 r-rappdirs@0.3.3 r-httr@1.4.7 r-crayon@1.5.3 r-cli@3.6.3
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/ropensci/ramlegacy
Licenses: Expat
Synopsis: Download and Read RAM Legacy Stock Assessment Database
Description:

This package contains functions to download, cache and read in Excel version of the RAM Legacy Stock Assessment Data Base, an online compilation of stock assessment results for commercially exploited marine populations from around the world. The database is named after Dr. Ransom A. Myers whose original stock-recruitment database, is no longer being updated. More information about the database can be found at <https://ramlegacy.org/>. Ricard, D., Minto, C., Jensen, O.P. and Baum, J.K. (2012) <doi:10.1111/j.1467-2979.2011.00435.x>.

r-rdacca-hp 1.1-1
Propagated dependencies: r-vegan@2.6-8 r-ggplot2@3.5.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/laijiangshan/rdacca.hp
Licenses: GPL 2+ GPL 3+
Synopsis: Hierarchical and Variation Partitioning for Canonical Analysis
Description:

This function conducts variation partitioning and hierarchical partitioning to calculate the unique, shared (referred as to "common") and individual contributions of each predictor (or matrix) towards explained variation (R-square and adjusted R-square) on canonical analysis (RDA,CCA and db-RDA), applying the algorithm of Lai J.,Zou Y., Zhang J.,Peres-Neto P.(2022) Generalizing hierarchical and variation partitioning in multiple regression and canonical analyses using the rdacca.hp R package.Methods in Ecology and Evolution,13: 782-788 <DOI:10.1111/2041-210X.13800>.

r-arulescba 1.2.7
Dependencies: openjdk@21.0.2
Propagated dependencies: r-matrix@1.7-1 r-glmnet@4.1-8 r-discretization@1.0-1.1 r-arules@1.7-8
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://github.com/mhahsler/arulesCBA
Licenses: GPL 3
Synopsis: Classification Based on Association Rules
Description:

This package provides the infrastructure for association rule-based classification including the algorithms CBA, CMAR, CPAR, C4.5, FOIL, PART, PRM, RCAR, and RIPPER to build associative classifiers. Hahsler et al (2019) <doi:10.32614/RJ-2019-048>.

r-baseballr 1.6.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.2.1 r-stringr@1.5.1 r-rvest@1.0.4 r-rlang@1.1.4 r-rcppparallel@5.1.9 r-rcpp@1.0.13-1 r-purrr@1.0.2 r-magrittr@2.0.3 r-lubridate@1.9.3 r-jsonlite@1.8.9 r-janitor@2.2.0 r-httr@1.4.7 r-glue@1.8.0 r-ggplot2@3.5.1 r-dplyr@1.1.4 r-data-table@1.16.2 r-cli@3.6.3
Channel: guix-cran
Location: guix-cran/packages/b.scm (guix-cran packages b)
Home page: https://billpetti.github.io/baseballr/
Licenses: Expat
Synopsis: Acquiring and Analyzing Baseball Data
Description:

This package provides numerous utilities for acquiring and analyzing baseball data from online sources such as Baseball Reference <https://www.baseball-reference.com/>, FanGraphs <https://www.fangraphs.com/>, and the MLB Stats API <https://www.mlb.com/>.

r-cvmaplfam 0.1.0
Propagated dependencies: r-quadprog@1.5-8 r-mgcv@1.9-1 r-mass@7.3-61 r-fda@6.2.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cvmaPLFAM
Licenses: GPL 3+
Synopsis: Cross-Validation Model Averaging for Partial Linear Functional Additive Models
Description:

Produce an averaging estimate/prediction by combining all candidate models for partial linear functional additive models, using multi-fold cross-validation criterion. More details can be referred to Shishi Liu and Jingxiao Zhang. (2021) <arXiv:2105.00966>.

r-cureplots 1.1.1
Propagated dependencies: r-glue@1.8.0 r-ggplot2@3.5.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://github.com/gbasulto/cureplots
Licenses: AGPL 3+
Synopsis: CURE (Cumulative Residual) Plots
Description:

This package creates ggplot2 Cumulative Residual (CURE) plots to check the goodness-of-fit of a count model; or the tables to create a customized version. A dataset of crashes in Washington state is available for illustrative purposes.

r-gensphere 1.3
Propagated dependencies: r-sphericalcubature@1.5 r-simplicialcubature@1.3 r-rgl@1.3.12 r-mvmesh@1.6 r-geometry@0.5.0
Channel: guix-cran
Location: guix-cran/packages/g.scm (guix-cran packages g)
Home page: https://cran.r-project.org/package=gensphere
Licenses: GPL 3+
Synopsis: Generalized Spherical Distributions
Description:

Define and compute with generalized spherical distributions - multivariate probability laws that are specified by a star shaped contour (directional behavior) and a radial component. The methods are described in Nolan (2016) <doi:10.1186/s40488-016-0053-0>.

r-gt4ireval 2.0
Channel: guix-cran
Location: guix-cran/packages/g.scm (guix-cran packages g)
Home page: https://github.com/julian-urbano/gt4ireval/
Licenses: Expat
Synopsis: Generalizability Theory for Information Retrieval Evaluation
Description:

This package provides tools to measure the reliability of an Information Retrieval test collection. It allows users to estimate reliability using Generalizability Theory and map those estimates onto well-known indicators such as Kendall tau correlation or sensitivity.

r-gen2stage 1.0
Propagated dependencies: r-clinfun@1.1.5
Channel: guix-cran
Location: guix-cran/packages/g.scm (guix-cran packages g)
Home page: https://cran.r-project.org/package=gen2stage
Licenses: GPL 2+
Synopsis: Generalized Two-Stage Designs for Phase II Single-Arm Studies
Description:

One can find single-stage and two-stage designs for a phase II single-arm study with either efficacy or safety/toxicity endpoints as described in Kim and Wong (2019) <doi:10.29220/CSAM.2019.26.2.163>.

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