This package lets you perform unsupervised clustering of amplicon sequencing data in microbiome studies with the Dirichlet-tree Multinomial Mixtures.

This package provides a more comfortable interface to work with R data or source files in a key-value fashion.

This package provides useful tools to pry back the covers of R and understand the language at a deeper level.

This is a framework for construction and analysis of 2D Monte-Carlo simulations. In addition, this package includes various distributions.

This package provides functions for feed-forward neural networks with a single hidden layer, and for multinomial log-linear models.

This is a QTL mapping toolkit for inbred crosses and recombinant inbred lines. It includes maximum likelihood and Bayesian tools.

The ade4 package contains data analysis functions to analyze ecological and environmental data in the framework of Euclidean exploratory methods.

Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.

Utilizes spatial association marginal contributions derived from spatial stratified heterogeneity to capture the degree of correlation between spatial patterns.

Calculates the credit debt for the next period based on the available data using the cross-classification credibility model.

Apache licensed alternative to Highcharter which provides functions for both fast and beautiful interactive visualization for Markdown and Shiny'.

This package provides functions for direct surrogate variable analysis, which can identify hidden factors in high-dimensional biomedical data.

This package provides a small utility which wraps Rscript and provides access to all R functions from the shell.

This package provides a variety of functions to fit linear and nonlinear regression with a large selection of distributions.

We provide data sets used in the textbook "Introduction to Sports Analytics using R" by Elmore and Urbaczweski (2025).

Collection of functions for quality control (QC) of climatological daily time series (e.g. the ECA&D station data).

The 14th generation International Geomagnetic Reference Field (IGRF). A standard spherical harmonic representation of the Earth's main field.

Prediction with k* nearest neighbor algorithm based on a publication by Anava and Levy (2016) <arXiv:1701.07266>.

This package provides methods of developing linear time series modelling. Methods are given for loglikelihood computation, forecasting and simulation.

Set of tools for mapping of categorical response variables based on principal component analysis (pca) and multidimensional unfolding (mdu).

The Matthews correlation coefficient (MCC) score is calculated (Matthews BW (1975) <DOI:10.1016/0005-2795(75)90109-9>).

Performing drug response analyses and IC50 estimations using n-Parameter logistic regression. Can also be applied to proliferation analyses.

Design and implementation of Percentile-based Shewhart Control Charts for continuous data. Faraz (2019) <doi:10.1002/qre.2384>.

This package provides R functions to read/write/format Excel 2007 and Excel 97/2000/XP/2003 file formats.