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This package provides a sparklyr <https://spark.rstudio.com/> extension that provides an R interface for GraphFrames <https://graphframes.github.io/>. GraphFrames is a package for Apache Spark that provides a DataFrame-based API for working with graphs. Functionality includes motif finding and common graph algorithms, such as PageRank and Breadth-first search.
This package provides a ggplot2 extension that enables visualization of IP (Internet Protocol) addresses and networks. The address space is mapped onto the Cartesian coordinate system using a space-filling curve. Offers full support for both IPv4 and IPv6 (Internet Protocol versions 4 and 6) address spaces.
This package provides an interface to the GeoNode API, allowing to upload and publish metadata and data in GeoNode'. For more information about the GeoNode API, see <https://geonode.org/>.
This package implements a one-sector Armington-CES gravity model with general equilibrium (GE) effects. This model is designed to analyze international and domestic trade by capturing the impacts of trade costs and policy changes within a general equilibrium framework. Additionally, it includes a local parameter to run simulations on productivity. The package provides functions for calibration, simulation, and analysis of the model.
This package contains many functions useful for monitoring and reporting the results of clinical trials and other experiments in which treatments are compared. LaTeX is used to typeset the resulting reports, recommended to be in the context of knitr'. The Hmisc', ggplot2', and lattice packages are used by greport for high-level graphics.
Generalization of supervised principal component regression (SPCR; Bair et al., 2006, <doi:10.1198/016214505000000628>) to support continuous, binary, and discrete variables as outcomes and predictors (inspired by the superpc R package <https://cran.r-project.org/package=superpc>).
Define, simulate, and validate stock-flow consistent (SFC) macroeconomic models. The godley R package offers tools to dynamically define model structures by adding variables and specifying governing systems of equations. With it, users can analyze how different macroeconomic structures affect key variables, perform parameter sensitivity analyses, introduce policy shocks, and visualize resulting economic scenarios. The accounting structure of SFC models follows the approach outlined in the seminal study by Godley and Lavoie (2007, ISBN:978-1-137-08599-3), ensuring a comprehensive integration of all economic flows and stocks. The algorithms implemented to solve the models are based on methodologies from Kinsella and O'Shea (2010) <doi:10.2139/ssrn.1729205>, Peressini and Sullivan (1988, ISBN:0-387-96614-5), and contributions by Joao Macalos.
It provides an interesting solution for handling a high number of segmentation variables in partial least squares structural equation modeling. The package implements the "Pathmox" algorithm (Lamberti, Sanchez, and Aluja,(2016)<doi:10.1002/asmb.2168>) including the F-coefficient test (Lamberti, Sanchez, and Aluja,(2017)<doi:10.1002/asmb.2270>) to detect the path coefficients responsible for the identified differences). The package also allows running the hybrid multi-group approach (Lamberti (2021) <doi:10.1007/s11135-021-01096-9>).
This package provides tools implementing an automated version of the graphic double integration technique (GDI) for volume implementation, and some other related utilities for paleontological image-analysis. GDI was first employed by Jerison (1973) <ISBN:9780323141086> and Hurlburt (1999) <doi:10.1080/02724634.1999.10011145> and is primarily used for volume or mass estimation of (extinct) animals. The package gdi aims to make this technique as convenient and versatile as possible. The core functions of gdi provide utilities for automatically measuring diameters from digital silhouettes provided as image files and calculating volume via graphic double integration with simple elliptical, superelliptical (following Motani 2001 <doi:10.1666/0094-8373(2001)027%3C0735:EBMFST%3E2.0.CO;2>) or complex cross-sectional geometries (see also Zhao 2024 <doi:10.7717/peerj.17479>). Additionally, the package provides functions for estimating the center of mass position (COM), the moment of inertia (I) for 3D shapes and the second moment of area (Ix, Iy, Iz) of 2D cross-sections, as well as for the visualization of results.
Facilitates the creation of page layout visualizations in which words are represented as rectangles with sizes relating to the length of the words. Which then is divided in lines and pages for easy overview of up to quite large texts.
This package provides ggplot2 equivalents of fixest::coefplot() and fixest::iplot(), for producing nice coefficient plots and interaction plots. Enables some additional functionality and convenience features, including grouped multi-'fixest object faceting and programmatic updates to existing plots (e.g., themes and aesthetics).
Automatically performs desired statistical tests (e.g. wilcox.test(), t.test()) to compare between groups, and adds the resulting p-values to the plot with an annotation bar. Visualizing group differences are frequently performed by boxplots, bar plots, etc. Statistical test results are often needed to be annotated on these plots. This package provides a convenient function that works on ggplot2 objects, performs the desired statistical test between groups of interest and annotates the test results on the plot.
Allows user to have graphical user interface to perform analysis of Agricultural experimental data. On using the functions in this package a Interactive User Interface will pop up. Apps Works by simple upload of files in CSV format.
Create Primavera-style interactive Gantt charts with Work Breakdown Structure (WBS) hierarchy and activities. Features include color-coded WBS items, indented labels, scrollable views for large projects, dynamic date formatting, and the ability to dim past activities. Built on top of plotly for interactive visualizations.
This package provides functions and analytics for GENEA-compatible accelerometer data into R objects. See topic GENEAread for an introduction to the package. See <https://activinsights.com/technology/geneactiv/> for more details on the GENEActiv device.
Fetch Professional Golfers Association (PGA) Tour tournament data from ESPN <https://www.espn.com/golf/> including leaderboards and hole-by-hole scoring. Data is returned in tidy tibble format ready for analysis. Supports local storage via RDS or Apache Arrow Parquet files for fast repeated access. Designed for golf analytics, data journalism, and fantasy sports research.
Efficient computation of likelihoods in design-based choice response time models, including the Decision Diffusion Model, is supported. The package enables rapid evaluation of likelihood functions for both single- and multi-subject models across trial-level data. It also offers fast initialisation of starting parameters for genetic sampling with many Markov chains, facilitating estimation in complex models typically found in experimental psychology and behavioural science. These optimisations help reduce computational overhead in large-scale model fitting tasks.
This package provides functions to calculate the best linear unbiased prediction of genotype-by-environment metrics: ecovalence, environmental variance, Finlay and Wilkinson regression and Lin and Binns superiority measure, based on a multi-environment genomic prediction model.
Mark your interesting genes on plot and support more parameters to handle your own gene set enrichment analysis plot.
Set of functions designed to solve inverse problems. The direct problem is used to calculate a cost function to be minimized. Here are listed some papers using Inverse Problems solvers and sensitivity analysis: (Jader Lugon Jr.; Antonio J. Silva Neto 2011) <doi:10.1590/S1678-58782011000400003>. (Jader Lugon Jr.; Antonio J. Silva Neto; Pedro P.G.W. Rodrigues 2008) <doi:10.1080/17415970802082864>. (Jader Lugon Jr.; Antonio J. Silva Neto; Cesar C. Santana 2008) <doi:10.1080/17415970802082922>.
Draw geospatial objects by clicks on the map. This packages can help data analyst who want to check their own geospatial hypothesis but has no ready-made geospatial objects.
Método simples e eficiente de geolocalizar dados no Brasil. O pacote é baseado em conjuntos de dados espaciais abertos de endereços brasileiros, utilizando como fonte principal o Cadastro Nacional de Endereços para Fins Estatà sticos (CNEFE). O CNEFE é publicado pelo Instituto Brasileiro de Geografia e Estatà stica (IBGE), órgão oficial de estatà sticas e geografia do Brasil. (A simple and efficient method for geolocating data in Brazil. The package is based on open spatial datasets of Brazilian addresses, primarily using the Cadastro Nacional de Endereços para Fins Estatà sticos (CNEFE), published by the Instituto Brasileiro de Geografia e Estatà stica (IBGE), Brazil's official statistics and geography agency.).
Allows users to fit a cosinor model using the glmmTMB framework. This extends on existing cosinor modeling packages, including cosinor and circacompare', by including a wide range of available link functions and the capability to fit mixed models. The cosinor model is described by Cornelissen (2014) <doi:10.1186/1742-4682-11-16>.
Visualise overlapping time series lines as a heatmap of line density. Provides a ggplot2 statistic implementing the DenseLines algorithm, which "normalizes time series by the arc length to compute accurate densities" (Moritz and Fisher, 2018) <doi:10.48550/arXiv.1808.06019>.