Provide functions for users or machines to quickly and easily retrieve datasets from the mindat.org API (<https://api.mindat.org/schema/redoc/>).

Identifies potential target sequences for a given set of primers and generates phylogenetic trees annotated with the taxonomies of the predicted amplification products.

This package provides a small set of helper functions to convert sjPlot HTML-tables to R data.frame objects / knitr::kable-tables.

This package implements spatial error estimation and permutation-based variable importance measures for predictive models using spatial cross-validation and spatial block bootstrap.

This package provides functions to combine, normalize and visualize spectral data, and for assembling customizable image grids suitable for publication-quality scientific figures.

Calculates several thermal comfort indexes using temperature, wind speed and relative humidity values, calculating indexes such as Humidex, windchill, Discomfort Index and others.

This package provides a machine learning package for automatic text classification that makes it simple for novice users to get started with machine learning, while allowing experienced users to easily experiment with different settings and algorithm combinations. The package includes eight algorithms for ensemble classification (svm, slda, boosting, bagging, random forests, glmnet, decision trees, neural networks), comprehensive analytics, and thorough documentation.

Finds the k nearest neighbours for every point in a given dataset using Jose Luis nanoflann library. There is support for exact searches, fixed radius searches with kd trees and two distances, the Euclidean and Manhattan'. For more information see <https://github.com/jlblancoc/nanoflann>. Also, the nanoflann library is exported and ready to be used via the linking to mechanism.

This package provides convenience functions to communicate with an Experigen server: Experigen (<http://github.com/aquincum/experigen>) is an online framework for creating linguistic experiments, and it stores the results on a dedicated server. This package can be used to retrieve the results from the server, and it is especially helpful with registered experiments, as authentication with the server has to happen.

Anglemania extracts genes from multi-batch scRNA-seq experiments for downstream dataset integration. It improves conventional usage of highly-variable genes for integration tasks.

This package contains an implementation of RFC 2388, which is used to process form data posted with HTTP POST method using enctype "multipart/form-data".

This package provides a set of Hoe plugins for tighter Git integration. It provides tasks to automate release tagging and pushing and changelog generation.

Daemons provides a way to wrap existing Ruby scripts to be run as a daemon and to be controlled by simple start/stop/restart commands.

This package provides curated gene target databases derived from ChIP-seq datasets, formatted as ChIPDB objects for use with TFEA.ChIP.

Extracts colors from various image types, returns customized reports and plots treemaps and 3D scatterplots of image compositions. Color palettes can also be created.

This package provides a Shiny interface developed in close coordination with the CTT package, providing a GUI that guides the user through CTT analyses.

Uses recursive partitioning to create homogeneous subgroups based on structural equation models fit in Mplus', a stand-alone program developed by Muthen and Muthen.

This package performs mean shift classification using linear and k-d tree based nearest neighbor implementations for the Gaussian, Epanechnikov, and biweight product kernels.

This package provides standardized access to a range of re-scaling methods for numerical vectors and time-series features calculated within the theft ecosystem.

Attempts to clean optical character recognition (OCR) errors in legacy Scottish Post Office Directories. Further attempts to match records from trades and general directories.

Several functions and S3 methods to construct a super learner in the presence of censored times-to-event and to evaluate its prognostic capacities.

Transform a Movie into a Synthetic Picture. A frame every 10 seconds is summarized into one colour, then every generated colors are stacked together.

Reports markers list, differentially expressed genes, associated pathways, cell-type annotations, does batch correction and other related single cell analyses all wrapped within Seurat'.

This package implements a simple, novel clustering algorithm based on optimizing the silhouette width. See <doi:10.1101/2023.11.07.566055> for details.