This rofi plugin tries to provide an interface to the buku bookmark manager, improving on the (outdated) buku_run script.

Meta-analysis is widely used to summarize estimated effects sizes across multiple statistical tests. Standard fixed and random effect meta-analysis methods assume that the estimated of the effect sizes are statistically independent. Here we relax this assumption and enable meta-analysis when the correlation matrix between effect size estimates is known.

Improves simultaneous inference under dependence of tests by estimating a collapsed null distribution through resampling. Accounting for the dependence between tests increases the power while reducing the variability of the false discovery proportion. This dependence is common in genomics applications, e.g. when combining flow cytometry measurements with microbiome sequence counts.

This package provides functions to access Twitter's filter, sample, and user streams, and to parse the output into data frames.

This package provides a collection of HTML, JavaScript, and CSS assets that dynamically generate beautiful documentation from a Swagger compliant API.

This package provides Cramer-Von Mises and Anderson-Darling tests of goodness-of-fit for continuous univariate distributions, using efficient algorithms.

This package allows the user to specify debug messages as special string constants, and control debugging of packages via environment variables.

This package provides a collection of meta-analysis datasets for teaching purposes, illustrating/testing meta-analytic methods, and validating published analyses.

When this gem is required, it extends the Time class with with additional methods for parsing and converting Times.

rofi-calc is a rofi plugin that uses qalculate's qalc to parse natural language input and provide results.

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

This package provides a data package of SELDI-TOF protein mass spectrometry data of 167 breast cancer and normal samples.

Make Bootstrap 4 Shiny dashboards. Use the full power of AdminLTE3, a dashboard template built on top of Bootstrap 4.

This package provides a simple and flexible way to generate Circos 2D track plot images. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics packages that comes with the base installation.

Optimizing methods for liquid chromatography coupled to mass spectrometry (LC-MS) poses a nontrivial challenge. The rawDiag package facilitates rational method optimization by generating MS operator-tailored diagnostic plots of scan-level metadata. The package is designed for use on the R shell or as a Shiny application on the Orbitrap instrument PC.

Sass is a CSS extension language. It extends CSS with features that don't exist yet like variables, nesting, mixins and inheritance.

Clap provides command line argument parsing features. It covers the simple case of executing code based on the flags or parameters passed.

Udev is a daemon which dynamically creates and removes device nodes from /dev/, handles hotplug events and loads drivers at boot time.

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

Ribotaper is a method for defining translated open reading frames (ORFs) using ribosome profiling (ribo-seq) data. This package provides the Ribotaper pipeline.

This package provides an implementation of chunked, compressed, N-dimensional arrays for R, Zarr specification version 2 (2024) <doi:10.5281/zenodo.11320255>.

This package provides a computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.

This package provides a fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.

The package provides estimators of the mode of univariate unimodal (and sometimes multimodal) data and values of the modes of usual probability distributions.