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The basic idea of this package is provides some tools to help the researcher to work with geostatistics. Initially, we present a collection of functions that allow the researchers to deal with spatial data using bootstrap procedure. There are five methods available and two ways to display them: bootstrap confidence interval - provides a two-sided bootstrap confidence interval; bootstrap plot - a graphic with the original variogram and each of the B bootstrap variograms.
Perform the Blinder-Oaxaca decomposition for generalized linear model with bootstrapped standard errors. The twofold and threefold decomposition are given, even the generalized linear model output in each group.
This package provides ggplot2 geoms analogous to geom_col() and geom_bar() that allow for treemaps using treemapify nested within each bar segment. Also provides geometries for subgroup bordering and text annotation.
This package provides a ggplot2 extension for drawing Hinton diagrams, a visualisation technique for numerical matrices in which the area of each square is proportional to the magnitude of the corresponding entry. For signed data, white squares indicate positive values and black squares indicate negative values on a grey background. Hinton diagrams are especially useful for visualising PCA weight matrices, correlation matrices, and transition matrices.
Implementations of the treatment effect estimators for hybrid (self-selection) experiments, as developed by Brian J. Gaines and James H. Kuklinski, (2011), "Experimental Estimation of Heterogeneous Treatment Effects Related to Self-Selection," American Journal of Political Science 55(3): 724-736.
Analyze small-sample clustered or longitudinal data with binary outcome using modified generalized estimating equations (GEE) with bias-adjusted covariance estimator. The package provides any combination of three GEE methods and 12 covariance estimators.
Implementation of functions, which combines binomial calculation and data visualisation, to analyse the differences in publishing authorship by gender described in Day et al. (2020) <doi:10.1039/C9SC04090K>. It should only be used when self-reported gender is unavailable.
Fits generalized linear models (GLMs) when there is missing data in both the response and categorical covariates. The functions implement likelihood-based methods using the Expectation and Maximization (EM) algorithm and optionally apply Firthâ s bias correction for improved inference. See Pradhan, Nychka, and Bandyopadhyay (2025) <https:>, Maiti and Pradhan (2009) <doi:10.1111/j.1541-0420.2008.01186.x>, Maity, Pradhan, and Das (2019) <doi:10.1080/00031305.2017.1407359> for further methodological details.
Maps of France in 1830, multivariate datasets from A.-M. Guerry and others, and statistical and graphic methods related to Guerry's "Moral Statistics of France". The goal is to facilitate the exploration and development of statistical and graphic methods for multivariate data in a geospatial context of historical interest.
Procedures for calculating variance components, study variation, percent study variation, and percent tolerance for gauge repeatability and reproducibility study. Methods included are ANOVA and Average / Range methods. Requires balanced study.
This package provides an interactive workflow for visualizing structural equation modeling (SEM), multi-group path diagrams, and network diagrams in R. Users can directly manipulate nodes and edges to create publication-quality figures while maintaining statistical model integrity. Supports integration with lavaan', OpenMx', tidySEM', and blavaan etc. Features include parameter-based aesthetic mapping, generative AI assistance, and complete reproducibility by exporting metadata for script-based workflows.
This package provides classes and methods for handling networks or graphs whose nodes are geographical (i.e. locations in the globe). The functionality includes the creation of objects of class geonetwork as a graph with node coordinates, the computation of network measures, the support of spatial operations (projection to different Coordinate Reference Systems, handling of bounding boxes, etc.) and the plotting of the geonetwork object combined with supplementary cartography for spatial representation.
This package provides a series of aliases to commonly used but difficult to remember ggplot2 sequences.
This package provides methods from the paper: Pena, EA and Slate, EH, "Global Validation of Linear Model Assumptions," J. American Statistical Association, 101(473):341-354, 2006.
Triangular and trapezoidal fuzzy numbers are used to study fuzzy logic, fuzzy reasoning and approximating, fuzzy regression models, etc. This package builds the generating function for triangular and trapezoidal fuzzy numbers based on Souliotis et al. (2022)<doi:10.3390/math10183350>. They proposed a method for the construction of fuzzy numbers via a cumulative distribution function based on the possibility theory.
The groupr package provides a more powerful version of grouped tibbles from dplyr'. It allows groups to be marked inapplicable, which is a simple but widely useful way to express structure in a dataset. It also provides powerful pivoting and other group manipulation functions.
One can find single-stage and two-stage designs for a phase II single-arm study with either efficacy or safety/toxicity endpoints as described in Kim and Wong (2019) <doi:10.29220/CSAM.2019.26.2.163>.
Network meta-analyses (mixed treatment comparisons) in the Bayesian framework using JAGS. Includes methods to assess heterogeneity and inconsistency, and a number of standard visualizations. van Valkenhoef et al. (2012) <doi:10.1002/jrsm.1054>; van Valkenhoef et al. (2015) <doi:10.1002/jrsm.1167>.
Facilitate reporting for regression and correlation modeling, hypothesis testing, variance analysis, outlier detection, and detailed descriptive statistics.
Represents generalized geometric ellipsoids with the "(U,D)" representation. It allows degenerate and/or unbounded ellipsoids, together with methods for linear and duality transformations, and for plotting. Thus ellipsoids are naturally extended to include lines, hyperplanes, points, cylinders, etc. This permits exploration of a variety to statistical issues that can be visualized using ellipsoids as discussed by Friendly, Fox & Monette (2013), Elliptical Insights: Understanding Statistical Methods Through Elliptical Geometry <doi:10.1214/12-STS402>.
Automated General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean, see Pretis, Reade and Sucarrat (2018) <doi:10.18637/jss.v086.i03> for an overview of the package. In advanced use, the estimator and diagnostics tests can be fully user-specified, see Sucarrat (2021) <doi:10.32614/RJ-2021-024>.
This package provides a simple API for downloading and reading xml data directly from Lattes <http://lattes.cnpq.br/>.
The Global Biodiversity Information Facility ('GBIF', <https://www.gbif.org>) sources data from an international network of data providers, known as nodes'. Several of these nodes - the "living atlases" (<https://living-atlases.gbif.org>) - maintain their own web services using software originally developed by the Atlas of Living Australia ('ALA', <https://www.ala.org.au>). galah enables the R community to directly access data and resources hosted by GBIF and its partner nodes.
Goodness-of-fit tests for skew-normal, gamma, inverse Gaussian, log-normal, Weibull', Frechet', Gumbel, normal, multivariate normal, Cauchy, Laplace or double exponential, exponential and generalized Pareto distributions. Parameter estimators for gamma, inverse Gaussian and generalized Pareto distributions.