This package is a port of Python's built-in functools.lru_cache
function for asyncio
. To better handle async behaviour, it also ensures multiple concurrent calls will only result in 1 call to the wrapped function, with all awaits receiving the result of that call when it completes.
MQTT and MQTT-SN are lightweight publish/subscribe messaging transports for TCP/IP and connection-less protocols (such as UDP). The Eclipse Paho project provides client side implementations of MQTT and MQTT-SN in a variety of programming languages. This package is for the Python implementation of an MQTT version client class.
aiostream
provides a collection of stream operators that can be combined to create asynchronous pipelines of operations. It can be seen as an asynchronous version of itertools
, although some aspects are slightly different. All the provided operators return a unified interface called a stream. A stream is an enhanced asynchronous iterable.
The asttokens
module annotates Python abstract syntax trees (ASTs) with the positions of tokens and text in the source code that generated them. It makes it possible for tools that work with logical AST nodes to find the particular text that resulted in those nodes, for example for automated refactoring or highlighting.
The nbconvert
tool, jupyter nbconvert
, converts notebooks to various other formats via Jinja templates. It allows you to convert an .ipynb
notebook file into various static formats including:
HTML
LaTeX
PDF
Reveal JS
Markdown (md)
ReStructured Text (rst)
executable script
Soup Sieve is a CSS selector library designed to be used with Beautiful Soup 4. It aims to provide selecting, matching, and filtering using modern CSS selectors. Soup Sieve currently provides selectors from the CSS level 1 specifications up through the latest CSS level 4 drafts and beyond (though some are not yet implemented).
pycountry
provides the ISO databases for the standards:
639-3 (Languages)
3166 (Countries)
3166-3 (Deleted Countries)
3166-2 (Subdivisions of countries)
4217 (Currencies)
15924 (Scripts)
It includes a copy from Debian’s pkg-isocodes and makes the data accessible through a Python API.
pycountry
provides the ISO databases for the standards:
639-3 (Languages)
3166 (Countries)
3166-3 (Deleted Countries)
3166-2 (Subdivisions of countries)
4217 (Currencies)
15924 (Scripts)
It includes a copy from Debian’s pkg-isocodes and makes the data accessible through a Python API.
Astrolib PySynphot (hereafter referred to only as pysynphot) is an object-oriented replacement for STSDAS SYNPHOT synthetic photometry package in IRAF. pysynphot
simulates photometric data and spectra as they are observed with the Hubble Space Telescope (HST). Passbands for standard photometric systems are available, and users can incorporate their own filters, spectra, and data.
SnapTools
can operate on snap files the following types of operations:
index the reference genome before alignment;
align reads to the corresponding reference genome;
pre-process by convert pair-end reads into fragments, checking the mapping quality score, alignment and filtration;
create the cell-by-bin matrix.
FontTools/TTX is a library to manipulate font files from Python. It supports reading and writing of TrueType/OpenType fonts, reading and writing of AFM files, reading (and partially writing) of PS Type 1 fonts. The package also contains a tool called “TTX” which converts TrueType/OpenType fonts to and from an XML-based format.
This package provides both simple, atomic constructs (such as integers of various sizes), as well as composite ones which allow you form hierarchical and sequential structures of increasing complexity. It features bit and byte granularity, easy debugging and testing, an easy-to-extend subclass system, and lots of primitive constructs to make your work easier.
The main purpose of this package is to provide more complex arithmetic operations on dates/times. Heavy use is made of the relativedelta
type from the dateutil
library. Much of this package is just a light wrapper on top of this with some added features such as range generation and business day calculation.
The xmlschema
library is an implementation of XML Schema for Python. It has full support for the XSD 1.0 and 1.1 standards, an XPath-based API for finding schema's elements and attributes; and can encode and decode XML data to JSON and other formats.
This package includes simulation models for an induction motor, a synchronous reluctance motor, and a permanent-magnet synchronous motor. The motor models are simulated in the continuous-time domain while the control algorithms run in discrete time. The default solver is the explicit Runge-Kutta method of order 5(4) from scipy.integrate.solve_ivp.
The goal of GeoPandas is to make working with geospatial data in Python easier. It combines the capabilities of Pandas and Shapely, providing geospatial operations in Pandas and a high-level interface to multiple geometries to Shapely. GeoPandas enables you to easily do operations in Python that would otherwise require a spatial database such as PostGIS.
specutils
is a Python package for representing, loading, manipulating,and analyzing astronomical spectroscopic data. The generic data containers and accompanying modules provide a toolbox that the astronomical community can use to build more domain-specific packages. For more details about the underlying principles, see APE13.
geosketch is a Python package that implements the geometric sketching algorithm described by Brian Hie, Hyunghoon Cho, Benjamin DeMeo, Bryan Bryson, and Bonnie Berger in "Geometric sketching compactly summarizes the single-cell transcriptomic landscape", Cell Systems (2019). This package provides an example implementation of the algorithm as well as scripts necessary for reproducing the experiments in the paper.
HTML to Text is a Python library for extract text from HTML. Contrary to other solution such as LXML or Beautiful Soup, the text extracted with html_text
does not contain elements such as JavaScript or inline styles not normally visible to users. It also normalizes white space characters in a smarter, more visually pleasing style.
Biopython is a set of tools for biological computation including parsers for bioinformatics files into Python data structures; interfaces to common bioinformatics programs; a standard sequence class and tools for performing common operations on them; code to perform data classification; code for dealing with alignments; code making it easy to split up parallelizable tasks into separate processes; and more.
Biopython is a set of tools for biological computation including parsers for bioinformatics files into Python data structures; interfaces to common bioinformatics programs; a standard sequence class and tools for performing common operations on them; code to perform data classification; code for dealing with alignments; code making it easy to split up parallelizable tasks into separate processes; and more.
Biopython is a set of tools for biological computation including parsers for bioinformatics files into Python data structures; interfaces to common bioinformatics programs; a standard sequence class and tools for performing common operations on them; code to perform data classification; code for dealing with alignments; code making it easy to split up parallelizable tasks into separate processes; and more.
Hotspot is a tool for identifying informative genes (and gene modules) in a single-cell dataset. Importantly, "informative" is decided based on how well a gene's variation agrees with some cell metric---some similarity mapping between cells. Genes which are informative are those whose expression varies in similar way among cells which are nearby in the given metric.
pyjanitor
provides a set of data cleaning routines for pandas
DataFrames. These routines extend the method chaining API defined by pandas
for a subset of its methods. Originally, this package was a port of the R package by the same name and it is inspired by the ease-of-use and expressiveness of the dplyr
package.