Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.
Converts standardized R4SUB (R for Regulatory Submission) evidence into indicator scores, pillar scores, and a Submission Confidence Index (SCI). Provides sensitivity analysis, explainability tables, and decision band classification to answer the question: are we ready for regulatory submission.
This package provides a Java implementation of the RAKE algorithm ('Rose', S., Engel', D., Cramer', N. and Cowley', W. (2010) <doi:10.1002/9780470689646.ch1>), which can be used to extract keywords from documents without any training data.
An implementation of Kaplan, Betancourt, Steorts (2022) <doi:10.1080/00031305.2022.2041482> that creates representative records for use in downstream tasks after entity resolution is performed. Multiple methods for creating the representative records (data sets) are provided.
Mathematical and statistical tools for computational biology in drug discovery. Functions are designed for high performance. Implements the hierarchical fuzzy multi-linkage partitioning method proposed by Huang et al. (2007) <doi:10.1186/gb-2007-8-9-r183>.
This package provides tools for parsing Illumina's microarray output files, including IDAT.
This package provides basic functions for filtering genes from high-throughput sequencing experiments.
This is a package for the discovery of communities in Pore-C concatemers.
This package lets you assign, extract, or remove variable labels from R vectors.
This package creates scatterpie plots, especially useful for plotting pies on a map.
This package provides tools for functional linear modeling and analysis of actigraphy data.
Partition a data frame across multiple worker processes to provide simple multicore parallelism.
Interactvive graphics in a web browser from R, using websockets and JSON.
chimeraviz manages data from fusion gene finders and provides useful visualization tools.
This package implements classes and methods for large-scale SNP association studies.
Data Package automatically created on Sun Nov 19 15:59:29 2006.
Graphically displays correlation in microarray data that is due to insufficient normalization.
Platform Design Info for The Manufacturer's Name Pae_G1a.
Platform Design Info for The Manufacturer's Name MG_U74A.
Platform Design Info for The Manufacturer's Name MG_U74C.
Platform Design Info for The Manufacturer's Name HG-U219.
Platform Design Info for The Manufacturer's Name HG_U95D.
Platform Design Info for The Manufacturer's Name HG_U95E.
Platform Design Info for The Manufacturer's Name HG_U95C.