The rmoo package is a framework for multi- and many-objective optimization, which allows researchers and users versatility in parameter configuration, as well as tools for analysis, replication and visualization of results. The rmoo package was built as a fork of the GA package by Luca Scrucca(2017) <DOI:10.32614/RJ-2017-008> and implementing the Non-Dominated Sorting Genetic Algorithms proposed by K. Deb's.

Designed to support the application of plant trait data providing easy applicable functions for the basic steps of data preprocessing, e.g. data import, data exploration, selection of columns and rows, excluding trait data according to different attributes, geocoding, long- to wide-table transformation, and data export. rtry was initially developed as part of the TRY R project to preprocess trait data received via the TRY database.

R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.

Routines that allow the user to run a large number of goodness-of-fit tests. It allows for data to be continuous or discrete. It includes routines to estimate the power of the tests and display them as a power graph. The routine run.studies allows a user to quickly study the power of a new method and how it compares to some of the standard ones.

Independent Surrogate Variable Analysis is an algorithm for feature selection in the presence of potential confounding factors (see Teschendorff AE et al 2011, <doi: 10.1093/bioinformatics/btr171>).

Provide nonparametric methods for mean regression model, modal regression and conditional density estimation in the presence/absence of measurement error. Bandwidth selection is also provided for each method.

This package implements both real-valued branches of the Lambert-W function (Corless et al, 1996) <doi:10.1007/BF02124750> without the need for installing the entire GSL.

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Useful functions to visualize single cell and spatial data. It supports visualizing Seurat', SingleCellExperiment and SpatialExperiment objects through grammar of graphics syntax implemented in ggplot2'.

Create American Psychological Association Style, Seventh Edition documents. Format numbers and text consistent with APA style. Create tables that comply with APA style by extending flextable functions.

Computation of asymptotic confidence intervals for negative and positive predictive values in binary diagnostic tests in case-control studies. Experimental design for hypothesis tests on predictive values.

Implementation of a statistical approach for estimating the joint health effects of multiple concurrent exposures, as described in Bobb et al (2015) <doi:10.1093/biostatistics/kxu058>.

Support ecological analyses such as ordination and clustering. Contains consistent and easy wrapper functions of stat', vegan', and labdsv packages, and visualisation functions of ordination and clustering.

This package provides utilities to facilitate handling of Fude Polygon data downloadable from the Ministry of Agriculture, Forestry and Fisheries website <https://open.fude.maff.go.jp>.

Generalized Mann-Whitney type tests based on probabilistic indices and new diagnostic plots, for the underlying manuscript see Fischer, Oja (2015) <doi:10.18637/jss.v065.i09>.

Fitting and validation of machine learning algorithms for volume prediction of trees, currently for conifer trees based on diameter at breast height and height as explanatory variables.

This package performs Multiple Factor Analysis method for quantitative, categorical, frequency and mixed data, in addition to generating a lot of graphics, also has other useful functions.

Mapping Averaged Pairwise Information (MAPI) is an exploratory method providing graphical representations summarizing the spatial variation of pairwise metrics (eg. distance, similarity coefficient, ...) computed between georeferenced samples.

Detect outlying observations in functional data sets based on the minimum regularized covariance trace (MRCT) estimator. Includes implementation of Oguamalam et al. (2023) <arXiv:2307.13509>.

This package provides some functions to get Korean text sample from news articles in Naver which is popular news portal service <https://news.naver.com/> in Korea.

This package provides routines for finding an Optimal System of Distinct Representatives (OSDR), as defined by D.Gale (1968) <doi:10.1016/S0021-9800(68)80039-0>.

Analysis of terms in linear, generalized and mixed linear models, on the basis of multiple comparisons of factor contrasts. Specially suited for the analysis of interaction terms.

Computes the All-Resolution Inference method in the permutation framework, i.e., simultaneous lower confidence bounds for the number of true discoveries. <doi:10.1002/sim.9725>.

Access Amazon Web Service Simple Storage Service ('S3') <https://aws.amazon.com/s3/> as if it were a file system. Interface based on the R package fs'.