_            _    _        _         _
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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-logisticrr 0.3.0
Propagated dependencies: r-nnet@7.3-20
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/youjin1207/logisticRR
Licenses: GPL 3+ FSDG-compatible
Build system: r
Synopsis: Adjusted Relative Risk from Logistic Regression
Description:

Adjusted odds ratio conditional on potential confounders can be directly obtained from logistic regression. However, those adjusted odds ratios have been widely incorrectly interpreted as a relative risk. As relative risk is often of interest in public health, we provide a simple code to return adjusted relative risks from logistic regression model under potential confounders.

r-lifeinsurancecontracts 0.0.6
Propagated dependencies: r-lifeinsurer@1.0.1
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://gitlab.open-tools.net/R/LifeInsureR
Licenses: GPL 2+
Build system: r
Synopsis: Framework for Traditional Life Insurance Contracts
Description:

Use of this package is deprecated. It has been renamed to LifeInsureR'.

r-lavaanextra 0.2.2
Propagated dependencies: r-lavaan@0.6-20 r-insight@1.4.3
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://lavaanExtra.remi-theriault.com
Licenses: Expat
Build system: r
Synopsis: Convenience Functions for Package 'lavaan'
Description:

Affords an alternative, vector-based syntax to lavaan', as well as other convenience functions such as naming paths and defining indirect links automatically, in addition to convenience formatting optimized for a publication and script sharing workflow.

r-lme4breeding 1.1.0
Propagated dependencies: r-matrix@1.7-4 r-lme4@1.1-37 r-enhancer@1.1.0 r-crayon@1.5.3
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lme4breeding
Licenses: GPL 2+
Build system: r
Synopsis: Breeding-Related Mixed-Effects Models
Description:

Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the lme4 machinery. The core computational algorithms are implemented using the Eigen C++ library for numerical linear algebra and RcppEigen glue'.

r-loopanalyst 1.2-7
Propagated dependencies: r-nlme@3.1-168
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://alexisdinno.com/LoopAnalyst/
Licenses: GPL 2
Build system: r
Synopsis: Collection of Tools to Conduct Levins' Loop Analysis
Description:

This package performs Levins loop analysis of qualitatively-specified complex causal systems. Loop analysis makes qualitative predictions of variable change in a system of causally interdependent variables, where "qualitative" means direct causal relationships and indirect causal effects are coded as sign only (i.e. increases, decreases, no change, and ambiguous). This implementation includes output support for graphs in .dot file format for use with visualization software such as graphviz (<https://graphviz.org>). LoopAnalyst provides tools for the construction and output of community matrices, computation and output of community effect matrices, tables of correlations, adjoint, absolute feedback, weighted feedback and weighted prediction matrices, change in life expectancy matrices, and feedback, path and loop enumeration tools.

r-lgewis 1.1
Propagated dependencies: r-skat@2.2.5 r-mvtnorm@1.3-3 r-geem@0.10.1 r-compquadform@1.4.4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LGEWIS
Licenses: GPL 3
Build system: r
Synopsis: Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Studies
Description:

This package provides functions for genome-wide association studies (GWAS)/gene-environment-wide interaction studies (GEWIS) with longitudinal outcomes and exposures. He et al. (2017) "Set-Based Tests for Gene-Environment Interaction in Longitudinal Studies" and He et al. (2017) "Rare-variant association tests in longitudinal studies, with an application to the Multi-Ethnic Study of Atherosclerosis (MESA)".

r-l1kdeconv 1.2.0
Propagated dependencies: r-mixtools@2.0.0.1 r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=l1kdeconv
Licenses: GPL 2+
Build system: r
Synopsis: Deconvolution for LINCS L1000 Data
Description:

LINCS L1000 is a high-throughput technology that allows the gene expression measurement in a large number of assays. However, to fit the measurements of ~1000 genes in the ~500 color channels of LINCS L1000, every two landmark genes are designed to share a single channel. Thus, a deconvolution step is required to infer the expression values of each gene. Any errors in this step can be propagated adversely to the downstream analyses. We present a LINCS L1000 data peak calling R package l1kdeconv based on a new outlier detection method and an aggregate Gaussian mixture model. Upon the remove of outliers and the borrowing information among similar samples, l1kdeconv shows more stable and better performance than methods commonly used in LINCS L1000 data deconvolution.

r-lbfgs 1.2.1.2
Propagated dependencies: r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lbfgs
Licenses: GPL 2+
Build system: r
Synopsis: Limited-memory BFGS Optimization
Description:

This package provides a wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implements both the Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS) and the Orthant-Wise Quasi-Newton Limited-Memory (OWL-QN) optimization algorithms. The L-BFGS algorithm solves the problem of minimizing an objective, given its gradient, by iteratively computing approximations of the inverse Hessian matrix. The OWL-QN algorithm finds the optimum of an objective plus the L1-norm of the problem's parameters. The package offers a fast and memory-efficient implementation of these optimization routines, which is particularly suited for high-dimensional problems.

r-lpcde 0.1.6
Propagated dependencies: r-rdpack@2.6.4 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-purrr@1.2.0 r-mvtnorm@1.3-3 r-matrix@1.7-4 r-mass@7.3-65 r-ggplot2@4.0.1 r-combinat@0.0-8
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lpcde
Licenses: GPL 3+
Build system: r
Synopsis: Boundary Adaptive Local Polynomial Conditional Density Estimator
Description:

This package provides tools for estimation and inference of conditional densities, derivatives and functions. This is the companion software for Cattaneo, Chandak, Jansson and Ma (2024) <doi:10.3150/23-BEJ1711>.

r-lakhesis 0.0.1
Propagated dependencies: r-shinydashboard@0.7.3 r-shiny@1.11.1 r-readr@2.1.6 r-rdpack@2.6.4 r-ggplot2@4.0.1 r-ca@0.71.1 r-bslib@0.9.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lakhesis
Licenses: GPL 3+
Build system: r
Synopsis: Consensus Seriation for Binary Data
Description:

Determining consensus seriations for binary incidence matrices, using a two-step process of Procrustes-fit correspondence analysis for heuristic selection of partial seriations and iterative regression to establish a single consensus. Contains the Lakhesis Calculator, a graphical platform for identifying seriated sequences. Collins-Elliott (2024) <https://volweb.utk.edu/~scolli46/sceLakhesis.pdf>.

r-lpanda 0.2.1
Propagated dependencies: r-scales@1.4.0 r-rcolorbrewer@1.1-3 r-magrittr@2.0.4 r-igraph@2.2.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://localpolitics.github.io/lpanda/
Licenses: Expat
Build system: r
Synopsis: Local Political Actor Network Diachronic Analysis Tools
Description:

This package provides functions to prepare, visualize, and analyse diachronic network data on local political actors, with a particular focus on the development of local party systems and identification of actor groups. Formalizes and automates a continuity diagram method that has been previously applied in research on Czech local politics, e.g. Bubenicek and Kubalek (2010, ISSN:1803-8220), Kubalek and Bubenicek (2012, ISSN:1803-8220), and Cmejrek, Bubenicek, and Copik (2010, ISBN:978-80-247-3061-5). The package also includes several example datasets derived from Czech municipal elections, compiled from official election results, field research, and previously published case studies on Czech local politics.

r-lifecourse 2.0
Propagated dependencies: r-traminer@2.2-13
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lifecourse
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Quantification of Lifecourse Fluidity
Description:

This package provides in built datasets and three functions. These functions are mobility_index, nonStanTest and linkedLives. The mobility_index function facilitates the calculation of lifecourse fluidity, whilst the nonStanTest and the linkedLives functions allow the user to determine the probability that the observed sequence data was due to chance. The linkedLives function acknowledges the fact that some individuals may have identical sequences. The datasets available provide sequence data on marital status(maritalData) and mobility (mydata) for a selected group of individuals from the British Household Panel Study (BHPS). In addition, personal and house ID's for 100 individuals are provided in a third dataset (myHouseID) from the BHPS.

r-ltmix 0.2.2
Propagated dependencies: r-pracma@2.4.6 r-gtools@3.9.5
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=ltmix
Licenses: GPL 3
Build system: r
Synopsis: Left-Truncated Mixtures of Gamma, Weibull, and Lognormal Distributions
Description:

Mixture modelling of one-dimensional data using combinations of left-truncated Gamma, Weibull, and Lognormal Distributions. Blostein, Martin & Miljkovic, Tatjana. (2019) <doi:10.1016/j.insmatheco.2018.12.001>.

r-leiv 2.0-7
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: http://www.r-project.org
Licenses: GPL 2+
Build system: r
Synopsis: Bivariate Linear Errors-In-Variables Estimation
Description:

Estimate the slope and intercept of a bivariate linear relationship by calculating a posterior density that is invariant to interchange and scaling of the coordinates.

r-libdeflate 1.24-7
Dependencies: cmake@4.1.3
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=libdeflate
Licenses: Expat
Build system: r
Synopsis: DEFLATE Compression and Static Library
Description:

Whole-buffer DEFLATE-based compression and decompression of raw vectors using the libdeflate library (see <https://github.com/ebiggers/libdeflate>). Provides the user with additional control over the speed and the quality of DEFLATE compression compared to the fixed level of compression offered in R's memCompress() function. Also provides the libdeflate static library and C headers along with a CMake target and packageâ config file that ease linking of libdeflate in packages that compile and statically link bundled libraries using CMake'.

r-lcopula 1.0.7
Propagated dependencies: r-rcpp@1.1.0 r-copula@1.1-6
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lcopula
Licenses: GPL 3
Build system: r
Synopsis: Liouville Copulas
Description:

Collections of functions allowing random number generations and estimation of Liouville copulas, as described in Belzile and Neslehova (2017) <doi:10.1016/j.jmva.2017.05.008>.

r-logrx 0.4.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-stringr@1.6.0 r-stringi@1.8.7 r-sessioninfo@1.2.3 r-rlang@1.1.6 r-purrr@1.2.0 r-magrittr@2.0.4 r-lifecycle@1.0.4 r-dplyr@1.1.4 r-digest@0.6.39
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://pharmaverse.github.io/logrx/
Licenses: Expat
Build system: r
Synopsis: Logging Utility Focus on Clinical Trial Programming Workflows
Description:

This package provides a utility to facilitate the logging and review of R programs in clinical trial programming workflows.

r-lenses 0.0.3
Propagated dependencies: r-tidyselect@1.2.1 r-rlang@1.1.6 r-magrittr@2.0.4
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: http://cfhammill.github.io/lenses
Licenses: Expat
Build system: r
Synopsis: Elegant Data Manipulation with Lenses
Description:

This package provides tools for creating and using lenses to simplify data manipulation. Lenses are composable getter/setter pairs for working with data in a purely functional way. Inspired by the Haskell library lens (Kmett, 2012) <https://hackage.haskell.org/package/lens>. For a fairly comprehensive (and highly technical) history of lenses please see the lens wiki <https://github.com/ekmett/lens/wiki/History-of-Lenses>.

r-linkagemapview 2.1.2
Propagated dependencies: r-rcolorbrewer@1.1-3 r-qtl@1.72 r-plotrix@3.8-13
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/louellette/LinkageMapView
Licenses: GPL 3
Build system: r
Synopsis: Plot Linkage Group Maps with Quantitative Trait Loci
Description:

This package produces high resolution, publication ready linkage maps and quantitative trait loci maps. Input can be output from R/qtl', simple text or comma delimited files. Output is currently a portable document file.

r-lfdr-mme 1.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=LFDR.MME
Licenses: GPL 3
Build system: r
Synopsis: Estimating Local False Discovery Rates Using the Method of Moments
Description:

Estimation of the local false discovery rate using the method of moments.

r-lm-br 2.9.8
Propagated dependencies: r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://cran.r-project.org/package=lm.br
Licenses: GPL 2+
Build system: r
Synopsis: Linear Model with Breakpoint
Description:

Exact significance tests for a changepoint in linear or multiple linear regression. Confidence regions with exact coverage probabilities for the changepoint. Based on Knowles, Siegmund and Zhang (1991) <doi:10.1093/biomet/78.1.15>.

r-lightauc 0.1.3
Propagated dependencies: r-rcppparallel@5.1.11-1 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/cadam00/lightAUC
Licenses: GPL 3
Build system: r
Synopsis: Fast AUC Computation
Description:

Fast calculation of Area Under Curve (AUC) metric of a Receiver Operating Characteristic (ROC) curve, using the algorithm of Fawcett (2006) <doi:10.1016/j.patrec.2005.10.010>. Therefore it is appropriate for large-scale AUC metric calculations.

r-lucid 1.9
Propagated dependencies: r-nlme@3.1-168
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://kwstat.github.io/lucid/
Licenses: Expat
Build system: r
Synopsis: Printing Floating Point Numbers in a Human-Friendly Format
Description:

Print vectors (and data frames) of floating point numbers using a non-scientific format optimized for human readers. Vectors of numbers are rounded using significant digits, aligned at the decimal point, and all zeros trailing the decimal point are dropped. See: Wright (2016). Lucid: An R Package for Pretty-Printing Floating Point Numbers. In JSM Proceedings, Statistical Computing Section. Alexandria, VA: American Statistical Association. 2270-2279.

r-leakyiv 0.0.1
Propagated dependencies: r-mvnfast@0.2.8 r-matrix@1.7-4 r-glasso@1.11 r-foreach@1.5.2 r-data-table@1.17.8 r-corpcor@1.6.10
Channel: guix-cran
Location: guix-cran/packages/l.scm (guix-cran packages l)
Home page: https://github.com/dswatson/leakyIV
Licenses: GPL 3+
Build system: r
Synopsis: Leaky Instrumental Variables
Description:

Instrumental variables (IVs) are a popular and powerful tool for estimating causal effects in the presence of unobserved confounding. However, classical methods rely on strong assumptions such as the exclusion criterion, which states that instrumental effects must be entirely mediated by treatments. In the so-called "leaky" IV setting, candidate instruments are allowed to have some direct influence on outcomes, rendering the average treatment effect (ATE) unidentifiable. But with limits on the amount of information leakage, we may still recover sharp bounds on the ATE, providing partial identification. This package implements methods for ATE bounding in the leaky IV setting with linear structural equations. For details, see Watson et al. (2024) <doi:10.48550/arXiv.2404.04446>.

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Total results: 68655