This package implements orbit counting using a fast combinatorial approach. Counts orbits of nodes and edges from edge matrix or data frame, or a graph object from the graph package.

This package provides functions to generate ensembles of generalized linear models using a greedy projected subset gradient descent algorithm. The sparsity and diversity tuning parameters are selected by cross-validation.

Transforms datetime data into a format ready for analysis. It offers two core functionalities; aggregating data to a higher level interval (thicken) and imputing records where observations were absent (pad).

This function produces both the numerical and graphical summaries of the QTL hotspot detection in the genomes that are available on the worldwide web including the flanking markers of QTLs.

This package provides functions for statistical analysis, modeling and simulation of time series with state space model, based on the methodology in Kitagawa (2020, ISBN: 978-0-367-18733-0).

This package provides tools to help developers and producers manipulate R objects and outputs. It includes tools for displaying results and objects, and for formatting them in the correct format.

ramr is an R package for detection of epimutations (i.e., infrequent aberrant DNA methylation events) in large data sets obtained by methylation profiling using array or high-throughput methylation sequencing. In addition, package provides functions to visualize found aberrantly methylated regions (AMRs), to generate sets of all possible regions to be used as reference sets for enrichment analysis, and to generate biologically relevant test data sets for performance evaluation of AMR/DMR search algorithms.

This package enables you to read and manipulate genome intervals and signals. It provides functionality similar to command-line tool suites within R, enabling interactive analysis and visualization of genome-scale data.

This package provides an easy and simple way to read, write and display bitmap images stored in the TIFF format. It can read and write both files and in-memory raw vectors.

This package provides functions for summarizing and plotting the output from Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic tests of convergence to the equilibrium distribution of the Markov chain.

This package provides a simple HTTP client, with tools for making HTTP requests, and mocking HTTP requests. The package is built on R6, and takes inspiration from Ruby's faraday gem.

This package supports twin models that are able to estimate the dynamic behaviour of the variance components in the classical twin models with respect to age using B-splines and P-splines.

Suit of tools for bi-level meta-analysis. The package can be used in a wide range of applications, including general hypothesis testings, differential expression analysis, functional analysis, and pathway analysis.

Allows the user to implement an address search auto completion menu on shiny text inputs. This is done using the Algolia Places JavaScript library. See <https://community.algolia.com/places/>.

This package provides tools for creating 2D and 3D biplots of multivariate data based on principal components analysis, together with diagnostics for reduction quality and enhanced visualization of variables and objects.

This package contains functions for estimating generalized parametric mixture and non-mixture cure models <doi:10.1016/j.cmpb.2022.107125>, loss of lifetime, mean residual lifetime, and crude event probabilities.

This package provides a device closing function which is able to crop graphics (e.g., PDF, PNG files) on Unix-like operating systems with the required underlying command-line tools installed.

Load Current Population Survey (CPS) microdata into R using the Census Bureau Data API (<https://www.census.gov/data/developers/data-sets.html>), including basic monthly CPS and CPS ASEC microdata.

This package provides functions for fitting a Bayesian model for grouping binary dissimilarity matrices in homogeneous clusters. Currently, it includes methods only for binary data (<doi:10.18637/jss.v100.i16>).

Approximates the likelihood of a generalized linear mixed model using Monte Carlo likelihood approximation. Then maximizes the likelihood approximation to return maximum likelihood estimates, observed Fisher information, and other model information.

Convert Leaf Area Index (LAI) from the Normalized Difference Vegetation Index (NDVI) using available equations from literature. Detailed description of conversion equations in Bajocco et al. 2022 <doi:10.3390/rs14153554>.

Allow users to obtain basketball statistics for the Australian basketball league NBL'<https://nbl.com.au/>. Stats include play-by-play, shooting locations, results and box scores for teams and players.

An interface to compute poverty and inequality indicators for more than 160 countries and regions from the World Bank's database of household surveys, through the Poverty and Inequality Portal (PIP).

Given a vector of Taylor series coefficients of sufficient length as input, the function returns the numerator and denominator coefficients for the Padé approximant of appropriate order (Baker, 1975) <ISBN:9780120748556>.