Approximates the likelihood of a generalized linear mixed model using Monte Carlo likelihood approximation. Then maximizes the likelihood approximation to return maximum likelihood estimates, observed Fisher information, and other model information.

Convert Leaf Area Index (LAI) from the Normalized Difference Vegetation Index (NDVI) using available equations from literature. Detailed description of conversion equations in Bajocco et al. 2022 <doi:10.3390/rs14153554>.

Use the open source MDB Tools utilities <https://github.com/mdbtools/mdbtools/>. Primarily used for converting proprietary Microsoft Access files to simple text files and then reading those as data frames.

Allow users to obtain basketball statistics for the Australian basketball league NBL'<https://nbl.com.au/>. Stats include play-by-play, shooting locations, results and box scores for teams and players.

An interface to compute poverty and inequality indicators for more than 160 countries and regions from the World Bank's database of household surveys, through the Poverty and Inequality Portal (PIP).

Given a vector of Taylor series coefficients of sufficient length as input, the function returns the numerator and denominator coefficients for the Padé approximant of appropriate order (Baker, 1975) <ISBN:9780120748556>.

This package provides the SELF criteria to learn causal structure. Please cite "Ruichu Cai, Jie Qiao, Zhenjie Zhang, Zhifeng Hao. SELF: Structural Equational Embedded Likelihood Framework for Causal Discovery. AAAI. 2018.".

Accurately estimates phase shifts by accounting for period changes and for the point in the circadian cycle at which the stimulus occurs. See Tackenberg et al. (2018) <doi:10.1177/0748730418768116>.

This is a framework that aims to provide methods and tools for assessing the impact of different sources of uncertainties (e.g.positional uncertainty) on performance of species distribution models (SDMs).).

Detects copy number alteration events in targeted exon sequencing data for tumor samples without matched normal controls. The advantage of this method is that it can be applied to smaller sequencing panels including evaluations of exon, transcript, gene, or even user specified genetic regions of interest. Functions in the package include steps for GC-content correction, calculation of quantile based normal karyotype ranges, and calculation of feature score. Cutoffs for "normal" quantile and score are user-adjustable.

Test Statistics for Independence in High-Dimensional Datasets. This package consists of two functions to perform the complete independence test based on test statistics proposed by Bulut (unpublished yet) and suggested by Najarzadeh (2021) <doi: 10.1080/03610926.2019.1702699>. The Bulut's statistic is not sensitive to outliers in high-dimensional data, unlike one of Najarzadeh (2021) <doi: 10.1080/03610926.2019.1702699>. So, the Bulut's statistic can be performed robustly by using RDnp function.

Handle climate data from the DWD ('Deutscher Wetterdienst', see <https://www.dwd.de/EN/climate_environment/cdc/cdc_node_en.html> for more information). Choose observational time series from meteorological stations with selectDWD()'. Find raster data from radar and interpolation according to <https://brry.github.io/rdwd/raster-data.html>. Download (multiple) data sets with progress bars and no re-downloads through dataDWD()'. Read both tabular observational data and binary gridded datasets with readDWD()'.

SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.

This package provides reference classes implementing some useful data structures. The package implements these data structures by using the reference class R6. Therefore, the classes of the data structures are also reference classes which means that their instances are passed by reference. The implemented data structures include stack, queue, double-ended queue, doubly linked list, set, dictionary and binary search tree. See for example <https://en.wikipedia.org/wiki/Data_structure> for more information about the data structures.

This package provides a model of single-layer groundwater flow in steady-state under the Dupuit-Forchheimer assumption can be created by placing elements such as wells, area-sinks and line-sinks at arbitrary locations in the flow field. Output variables include hydraulic head and the discharge vector. Particle traces can be computed numerically in three dimensions. The underlying theory is described in Haitjema (1995) <doi:10.1016/B978-0-12-316550-3.X5000-4> and references therein.

By placing on a circle 10 points numbered from 1 to 10, and connecting them by a straight line to the point corresponding to its multiplication by 2. (1 must be connected to 1 * 2 = 2, point 2 must be set to 2 * 2 = 4, point 3 to 3 * 2 = 6 and so on). You will obtain an amazing geometric figure that complicates and beautifies itself by varying the number of points and the multiplication table you use.

This package implements the regularized Gaussian maximum likelihood estimation of the inverse of a covariance matrix. It uses Newton's method and coordinate descent to solve the regularized inverse covariance matrix estimation problem.

This package provides an R interface to the Lawson-Hanson implementation of an algorithm for non-negative least squares (NNLS). It also allows the combination of non-negative and non-positive constraints.

This package provides functions and datasets for bootstrapping from the book "Bootstrap Methods and Their Application" by A.C. Davison and D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.

It contains functions that solve least squares linear regression problems under linear equality/inequality constraints. Functions for solving quadratic programming problems are also available, which transform such problems into least squares ones first.

This package provides several utility functions for the book entitled "Practices of Medical and Health Data Analysis using R" (Pearson Education Japan, 2007) with Japanese demographic data and some demographic analysis related functions.

The MAIT package contains functions to perform end-to-end statistical analysis of LC/MS Metabolomic Data. Special emphasis is put on peak annotation and in modular function design of the functions.

This package contains the R functions needed to perform Cluster-Of-Clusters Analysis (COCA) and Consensus Clustering (CC). For further details please see Cabassi and Kirk (2020) <doi:10.1093/bioinformatics/btaa593>.

The distributed online expectation maximization algorithms are used to solve parameters of Poisson mixture models. The philosophy of the package is described in Guo, G. (2022) <doi:10.1080/02664763.2022.2053949>.