Interact with the Brandwatch API <https://developers.brandwatch.com/docs>. Allows you to authenticate to the API and obtain data for projects, queries, query groups tags and categories. Also allows you to directly obtain mentions and aggregate data for a specified query or query group.
Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119> for more details.
Data package for the supplementary data in Prem et al. (2017) <doi:10.1371/journal.pcbi.1005697> and Prem et al. <doi:10.1371/journal.pcbi.1009098>. Provides easy access to contact data for 177 countries, for use in epidemiological, demographic or social sciences research.
This package provides functional tools such as fmap(), fwalk(), and fapply() to iterate over vectors, data frames, or grouped data with optional parallelism and real-time progress tracking. Designed for readable and reproducible workflows, including support for Monte Carlo simulations and benchmarking.
Compute bivariate dependence measures and perform bivariate competing risks analysis under the generalized Farlie-Gumbel-Morgenstern (FGM) copula. See Shih and Emura (2018) <doi:10.1007/s00180-018-0804-0> and Shih and Emura (2019) <doi:10.1007/s00362-016-0865-5> for details.
This package provides user tokens for ICES web services that require authentication and authorization. Web services covered by this package are ICES VMS database, the ICES DATSU web services, and the ICES SharePoint site <https://www.ices.dk/data/tools/Pages/WebServices.aspx>.
Calculation of key bacterial growth curve parameters using fourth degree polynomial functions. Six growth curve parameters are provided including peak growth rate, doubling time, lag time, maximum growth, and etc. ipolygrowth takes time series data from individual biological samples (with technical replicates) or multiple samples.
Simulate forest hydrology, forest function and dynamics over landscapes [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>]. Parallelization is allowed in several simulation functions and simulations may be conducted including spatial processes such as lateral water transfer and seed dispersal.
This project aims to make an accessible model for mosquito control resource optimization. The model uses data provided by users to estimate the mosquito populations in the sampling area for the sampling time period, and the optimal time to apply a treatment or multiple treatments.
Bayesian reconstruction of disease outbreaks using epidemiological and genetic information. Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C and Ferguson N. 2014. <doi:10.1371/journal.pcbi.1003457>. Campbell, F, Cori A, Ferguson N, Jombart T. 2019. <doi:10.1371/journal.pcbi.1006930>.
Parameter estimation for stochastic volatility models using maximum likelihood. The latent log-volatility is integrated out of the likelihood using the Laplace approximation. The models are fitted via TMB (Template Model Builder) (Kristensen, Nielsen, Berg, Skaug, and Bell (2016) <doi:10.18637/jss.v070.i05>).
This package provides functions for estimating mediation effects that vary over time as described in Cai X, Coffman DL, Piper ME, Li R. Estimation and inference for the mediation effect in a time-varying mediation model. BMC Med Res Methodol. 2022;22(1):1-12.
This package creates karyotype plots of arbitrary genomes and offers a complete set of functions to plot arbitrary data on them. It mimics many R base graphics functions coupling them with a coordinate change function automatically mapping the chromosome and data coordinates into the plot coordinates.
This package provides methods operating on rows and columns of matrices, e.g. rowMedians(), rowRanks(), and rowSds(). There are also some vector-based methods, e.g. binMeans(), madDiff() and weightedMedians(). All methods have been optimized for speed and memory usage.
The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".
The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".
The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".
The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".
The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".
The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".
The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".
The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".
The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".
The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".