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r-dada2 1.40.0
Propagated dependencies: r-biocgenerics@0.58.1 r-biostrings@2.80.1 r-ggplot2@4.0.3 r-iranges@2.46.0 r-rcpp@1.1.1-1.1 r-rcppparallel@5.1.11-2 r-reshape2@1.4.5 r-shortread@1.70.0 r-xvector@0.52.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://benjjneb.github.io/dada2/
Licenses: LGPL 2.0
Build system: r
Synopsis: Accurate, high-resolution sample inference from amplicon sequencing data
Description:

The dada2 package infers exact amplicon sequence variants (ASVs) from high-throughput amplicon sequencing data, replacing the coarser and less accurate OTU clustering approach. The dada2 pipeline takes as input demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier, and species-level assignment to 16S rRNA gene fragments by exact matching.

Total packages: 1