r-dartr-popgen 1.0.0
Propagated dependencies: r-stringr@1.6.0 r-patchwork@1.3.2 r-mass@7.3-65 r-ggplot2@4.0.1 r-ggdendro@0.2.0 r-future@1.68.0 r-furrr@0.3.1 r-dplyr@1.1.4 r-data-table@1.17.8 r-dartr-data@1.0.8 r-dartr-base@1.0.7 r-crayon@1.5.3 r-adegenet@2.1.11
Channel: guix-cran
Home page: https://green-striped-gecko.github.io/dartR/
Licenses: GPL 3+
Synopsis: Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis
Description:
Facilitates the analysis of SNP (single nucleotide polymorphism) and silicodart (presence/absence) data. dartR.popgen provides a suit of functions to analyse such data in a population genetics context. It provides several functions to calculate population genetic metrics and to study population structure. Quite a few functions need additional software to be able to run (gl.run.structure(), gl.blast(), gl.LDNe()). You find detailed description in the help pages how to download and link the packages so the function can run the software. dartR.popgen is part of the the dartRverse suit of packages. Gruber et al. (2018) <doi:10.1111/1755-0998.12745>. Mijangos et al. (2022) <doi:10.1111/2041-210X.13918>.
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