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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
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r-decomptumor2sig 2.24.0
Dependencies: perl@5.36.0
Propagated dependencies: r-biocgenerics@0.54.0 r-biostrings@2.76.0 r-bsgenome-hsapiens-ucsc-hg19@1.4.3 r-data-table@1.17.4 r-genomeinfodb@1.44.0 r-genomicfeatures@1.60.0 r-genomicranges@1.60.0 r-ggplot2@3.5.2 r-ggseqlogo@0.2 r-gridextra@2.3 r-matrix@1.7-3 r-plyr@1.8.9 r-quadprog@1.5-8 r-readxl@1.4.5 r-s4vectors@0.46.0 r-summarizedexperiment@1.38.1 r-txdb-hsapiens-ucsc-hg19-knowngene@3.2.2 r-variantannotation@1.54.1
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://rmpiro.net/decompTumor2Sig/
Licenses: GPL 2
Synopsis: Decomposition of individual tumors into mutational signatures
Description:

The package uses quadratic programming for signature refitting, i.e., to decompose the mutation catalog from an individual tumor sample into a set of given mutational signatures (either Alexandrov-model signatures or Shiraishi-model signatures), computing weights that reflect the contributions of the signatures to the mutation load of the tumor.

Total results: 1