_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
r-outrider 1.26.1
Propagated dependencies: r-txdbmaker@1.4.1 r-summarizedexperiment@1.38.1 r-scales@1.4.0 r-s4vectors@0.46.0 r-reshape2@1.4.4 r-rcpparmadillo@14.4.2-1 r-rcpp@1.0.14 r-rcolorbrewer@1.1-3 r-prroc@1.4 r-plyr@1.8.9 r-plotly@4.10.4 r-pheatmap@1.0.12 r-pcamethods@2.0.0 r-matrixstats@1.5.0 r-iranges@2.42.0 r-heatmaply@1.5.0 r-ggrepel@0.9.6 r-ggplot2@3.5.2 r-genomicranges@1.60.0 r-genomicfeatures@1.60.0 r-generics@0.1.4 r-deseq2@1.48.1 r-data-table@1.17.2 r-biocparallel@1.42.0 r-biocgenerics@0.54.0 r-bbmisc@1.13
Channel: guix-bioc
Location: guix-bioc/packages/o.scm (guix-bioc packages o)
Home page: https://github.com/gagneurlab/OUTRIDER
Licenses: Expat
Synopsis: OUTRIDER - OUTlier in RNA-Seq fInDER
Description:

Identification of aberrant gene expression in RNA-seq data. Read count expectations are modeled by an autoencoder to control for confounders in the data. Given these expectations, the RNA-seq read counts are assumed to follow a negative binomial distribution with a gene-specific dispersion. Outliers are then identified as read counts that significantly deviate from this distribution. Furthermore, OUTRIDER provides useful plotting functions to analyze and visualize the results.

Total results: 1