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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-hicontacts 1.12.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-summarizedexperiment@1.40.0 r-stringr@1.6.0 r-scales@1.4.0 r-s4vectors@0.48.0 r-rspectra@0.16-2 r-readr@2.1.6 r-matrix@1.7-4 r-iranges@2.44.0 r-interactionset@1.38.0 r-hicexperiment@1.10.0 r-ggrastr@1.0.2 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-dplyr@1.1.4 r-biocparallel@1.44.0 r-biocio@1.20.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/js2264/HiContacts
Licenses: Expat
Build system: r
Synopsis: Analysing cool files in R with HiContacts
Description:

HiContacts provides a collection of tools to analyse and visualize Hi-C datasets imported in R by HiCExperiment.

r-huex10stprobeset-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/huex10stprobeset.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix huex10 annotation data (chip huex10stprobeset)
Description:

Affymetrix huex10 annotation data (chip huex10stprobeset) assembled using data from public repositories.

r-human370quadv3ccrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human370quadv3cCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata for genotyping Illumina 370kQuad arrays using the crlmm package.

r-harman 1.38.0
Propagated dependencies: r-rcpp@1.1.0 r-matrixstats@1.5.0 r-ckmeans-1d-dp@4.3.5
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.bioinformatics.csiro.au/harman/
Licenses: FSDG-compatible
Build system: r
Synopsis: The removal of batch effects from datasets using a PCA and constrained optimisation based technique
Description:

Harman is a PCA and constrained optimisation based technique that maximises the removal of batch effects from datasets, with the constraint that the probability of overcorrection (i.e. removing genuine biological signal along with batch noise) is kept to a fraction which is set by the end-user.

r-hguatlas13k-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hguatlas13k.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k)
Description:

Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k) assembled using data from public repositories.

r-hummingbird 1.20.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-rcpp@1.1.0 r-iranges@2.44.0 r-genomicranges@1.62.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hummingbird
Licenses: FSDG-compatible
Build system: r
Synopsis: Bayesian Hidden Markov Model for the detection of differentially methylated regions
Description:

This package provides a package for detecting differential methylation. It exploits a Bayesian hidden Markov model that incorporates location dependence among genomic loci, unlike most existing methods that assume independence among observations. Bayesian priors are applied to permit information sharing across an entire chromosome for improved power of detection. The direct output of our software package is the best sequence of methylation states, eliminating the use of a subjective, and most of the time an arbitrary, threshold of p-value for determining significance. At last, our methodology does not require replication in either or both of the two comparison groups.

r-hu6800subbcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800subbcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu6800subbcdf
Description:

This package provides a package containing an environment representing the Hu6800subB.CDF file.

r-hu6800cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu6800cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hu6800cdf
Description:

This package provides a package containing an environment representing the Hu6800.CDF file.

r-hilda 1.24.0
Propagated dependencies: r-xvector@0.50.0 r-txdb-hsapiens-ucsc-hg19-knowngene@3.22.1 r-tidyr@1.3.1 r-stringr@1.6.0 r-s4vectors@0.48.0 r-rcpp@1.1.0 r-r2jags@0.8-9 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-genomicfeatures@1.62.0 r-forcats@1.0.1 r-cowplot@1.2.0 r-bsgenome-hsapiens-ucsc-hg19@1.4.3 r-biostrings@2.78.0 r-biocgenerics@0.56.0 r-abind@1.4-8
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/USCbiostats/HiLDA
Licenses: GPL 3
Build system: r
Synopsis: Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation
Description:

This package provides a package built under the Bayesian framework of applying hierarchical latent Dirichlet allocation. It statistically tests whether the mutational exposures of mutational signatures (Shiraishi-model signatures) are different between two groups. The package also provides inference and visualization.

r-hcg110cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hcg110cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hcg110cdf
Description:

This package provides a package containing an environment representing the HC_G110.cdf file.

r-hgubeta7-db 3.2.3
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgubeta7.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Unknown annotation data (chip hgubeta7)
Description:

Unknown annotation data (chip hgubeta7) assembled using data from public repositories.

r-hivprtplus2cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hivprtplus2cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hivprtplus2cdf
Description:

This package provides a package containing an environment representing the HIV PRTPlus 2.CDF file.

r-hspeccdf 0.99.1
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hspeccdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hspeccdf
Description:

This package provides a package containing an environment representing the HGU133Plus2_Hs_Hspec.cdf file.

r-hgu95d-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95d.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HG_U95D Array annotation data (chip hgu95d)
Description:

Affymetrix Affymetrix HG_U95D Array annotation data (chip hgu95d) assembled using data from public repositories.

r-hu35ksubbprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubbprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hu35ksubb
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubB\_probe\_tab.

r-hgu133plus2frmavecs 1.5.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133plus2frmavecs
Licenses: GPL 2+
Build system: r
Synopsis: Vectors used by frma for microarrays of type hgu133plus2
Description:

This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.

r-hugene20stprobeset-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene20stprobeset.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hugene20 annotation data (chip hugene20stprobeset)
Description:

Affymetrix hugene20 annotation data (chip hugene20stprobeset) assembled using data from public repositories.

r-hugene21sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hugene21sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster)
Description:

Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster) assembled using data from public repositories.

r-human1mv1ccrlmm 1.0.3
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/human1mv1cCrlmm
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metadata for fast genotyping with the 'crlmm' package
Description:

Package with metadata fast genotyping Illumina 1M arrays using the crlmm package.

r-htmg430acdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430acdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: htmg430acdf
Description:

This package provides a package containing an environment representing the HT_MG-430A.cdf file.

r-hilbertcurve 2.4.2
Propagated dependencies: r-rcpp@1.1.0 r-polylabelr@0.3.0 r-png@0.1-8 r-iranges@2.44.0 r-genomicranges@1.62.0 r-circlize@0.4.16
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/jokergoo/HilbertCurve
Licenses: Expat
Build system: r
Synopsis: Making 2D Hilbert Curve
Description:

Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.

r-hapfabia 1.52.0
Propagated dependencies: r-fabia@2.56.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: http://www.bioinf.jku.at/software/hapFabia/hapFabia.html
Licenses: LGPL 2.1+
Build system: r
Synopsis: hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
Description:

This package provides a package to identify very short IBD segments in large sequencing data by FABIA biclustering. Two haplotypes are identical by descent (IBD) if they share a segment that both inherited from a common ancestor. Current IBD methods reliably detect long IBD segments because many minor alleles in the segment are concordant between the two haplotypes. However, many cohort studies contain unrelated individuals which share only short IBD segments. This package provides software to identify short IBD segments in sequencing data. Knowledge of short IBD segments are relevant for phasing of genotyping data, association studies, and for population genetics, where they shed light on the evolutionary history of humans. The package supports VCF formats, is based on sparse matrix operations, and provides visualization of haplotype clusters in different formats.

r-hapmap370k 1.0.1
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hapmap370k
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Example Illumina 370k HapMap Data
Description:

Example HapMap data from Illumina 370k BeadChips.

r-h5vcdata 2.30.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/h5vcData
Licenses: GPL 3+
Build system: r
Synopsis: Example data for the h5vc package
Description:

This package contains the data used in the vignettes and examples of the h5vc package.

Total results: 2909