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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-hgu133atagcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133atagcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: hgu133atagcdf
Description:

This package provides a package containing an environment representing the HG-U133A_tag.CDF file.

r-huex10sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/huex10sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix huex10 annotation data (chip huex10sttranscriptcluster)
Description:

Affymetrix huex10 annotation data (chip huex10sttranscriptcluster) assembled using data from public repositories.

r-hybridexpress 1.6.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://github.com/almeidasilvaf/HybridExpress
Licenses: GPL 3
Build system: r
Synopsis: Comparative analysis of RNA-seq data for hybrids and their progenitors
Description:

HybridExpress can be used to perform comparative transcriptomics analysis of hybrids (or allopolyploids) relative to their progenitor species. The package features functions to perform exploratory analyses of sample grouping, identify differentially expressed genes in hybrids relative to their progenitors, classify genes in expression categories (N = 12) and classes (N = 5), and perform functional analyses. We also provide users with graphical functions for the seamless creation of publication-ready figures that are commonly used in the literature.

r-hu35ksubbprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hu35ksubbprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type hu35ksubb
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubB\_probe\_tab.

r-hgu95e-db 3.13.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu95e.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HG_U95E Array annotation data (chip hgu95e)
Description:

Affymetrix Affymetrix HG_U95E Array annotation data (chip hgu95e) assembled using data from public repositories.

r-hgu133a2frmavecs 1.2.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/hgu133a2frmavecs
Licenses: GPL 2+
Build system: r
Synopsis: Vectors used by frma for microarrays of type hgu133a2
Description:

This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.

r-htmg430a-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/htmg430a.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix HT_MG-430A Array annotation data (chip htmg430a)
Description:

Affymetrix Affymetrix HT_MG-430A Array annotation data (chip htmg430a) assembled using data from public repositories.

r-hgc 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/h.scm (guix-bioc packages h)
Home page: https://bioconductor.org/packages/HGC
Licenses: GPL 3
Build system: r
Synopsis: fast hierarchical graph-based clustering method
Description:

HGC (short for Hierarchical Graph-based Clustering) is an R package for conducting hierarchical clustering on large-scale single-cell RNA-seq (scRNA-seq) data. The key idea is to construct a dendrogram of cells on their shared nearest neighbor (SNN) graph. HGC provides functions for building graphs and for conducting hierarchical clustering on the graph. The users with old R version could visit https://github.com/XuegongLab/HGC/tree/HGC4oldRVersion to get HGC package built for R 3.6.

r-igvshiny 1.6.0
Propagated dependencies: r-shiny@1.11.1 r-randomcolor@1.1.0.1 r-jsonlite@2.0.0 r-httr@1.4.7 r-htmlwidgets@1.6.4 r-genomicranges@1.62.0 r-genomeinfodbdata@1.2.15 r-futile-logger@1.4.3 r-checkmate@2.3.3 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://github.com/gladkia/igvShiny
Licenses: Expat
Build system: r
Synopsis: igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)
Description:

This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.

r-intercellar 2.16.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://github.com/martaint/InterCellar
Licenses: Expat
Build system: r
Synopsis: InterCellar: an R-Shiny app for interactive analysis and exploration of cell-cell communication in single-cell transcriptomics
Description:

InterCellar is implemented as an R/Bioconductor Package containing a Shiny app that allows users to interactively analyze cell-cell communication from scRNA-seq data. Starting from precomputed ligand-receptor interactions, InterCellar provides filtering options, annotations and multiple visualizations to explore clusters, genes and functions. Finally, based on functional annotation from Gene Ontology and pathway databases, InterCellar implements data-driven analyses to investigate cell-cell communication in one or multiple conditions.

r-illuminahumanmethylation27kmanifest 0.4.0
Propagated dependencies: r-minfi@1.56.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://bioconductor.org/packages/IlluminaHumanMethylation27kmanifest
Licenses: Artistic License 2.0
Build system: r
Synopsis: Annotation for Illumina's 27k methylation arrays
Description:

Manifest for Illumina's 27k array data.

r-islify 1.2.0
Propagated dependencies: r-tiff@0.1-12 r-rbioformats@1.10.0 r-png@0.1-8 r-matrix@1.7-4 r-dbscan@1.2.3 r-autothresholdr@1.4.3 r-abind@1.4-8
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://github.com/Bioconductor/islify
Licenses: GPL 3
Build system: r
Synopsis: Automatic scoring and classification of cell-based assay images
Description:

This software is meant to be used for classification of images of cell-based assays for neuronal surface autoantibody detection or similar techniques. It takes imaging files as input and creates a composite score from these, that for example can be used to classify samples as negative or positive for a certain antibody-specificity. The reason for its name is that I during its creation have thought about the individual picture as an archielago where we with different filters control the water level as well as ground characteristica, thereby finding islands of interest.

r-igc 1.40.0
Propagated dependencies: r-plyr@1.8.9 r-data-table@1.17.8
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: http://github.com/ccwang002/iGC
Licenses: GPL 2
Build system: r
Synopsis: An integrated analysis package of Gene expression and Copy number alteration
Description:

This package is intended to identify differentially expressed genes driven by Copy Number Alterations from samples with both gene expression and CNA data.

r-isee 2.22.0
Propagated dependencies: r-viridislite@0.4.2 r-vipor@0.4.7 r-summarizedexperiment@1.40.0 r-singlecellexperiment@1.32.0 r-shinywidgets@0.9.0 r-shinyjs@2.1.0 r-shinydashboard@0.7.3 r-shinyace@0.4.4 r-shiny@1.11.1 r-s4vectors@0.48.0 r-rintrojs@0.3.4 r-mgcv@1.9-4 r-listviewer@4.0.0 r-igraph@2.2.1 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-dt@0.34.0 r-complexheatmap@2.26.0 r-colourpicker@1.3.0 r-circlize@0.4.16 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://isee.github.io/iSEE/
Licenses: Expat
Build system: r
Synopsis: Interactive SummarizedExperiment Explorer
Description:

Create an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. The interface supports transmission of selections between plots and tables, code tracking, interactive tours, interactive or programmatic initialization, preservation of app state, and extensibility to new panel types via S4 classes. Special attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.

r-illuminahumanv2-db 1.26.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://bioconductor.org/packages/illuminaHumanv2.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Illumina HumanWG6v2 annotation data (chip illuminaHumanv2)
Description:

Illumina HumanWG6v2 annotation data (chip illuminaHumanv2) assembled using data from public repositories.

r-imodmixdata 1.0.0
Propagated dependencies: r-experimenthub@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://github.com/biodatalab/iModMixData
Licenses: GPL 3
Build system: r
Synopsis: Data for iModMix Package
Description:

This package provides example datasets for the iModMix package, including gene, protein, and metabolite partial correlation matrices derived from ccRCC4 and FloresData_K_TK studies. The data are preprocessed and ready to use for testing, demonstrating iModMix workflows, and exploring correlation networks.

r-illuminahumanv4-db 1.26.0
Propagated dependencies: r-org-hs-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://bioconductor.org/packages/illuminaHumanv4.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)
Description:

Illumina HumanHT12v4 annotation data (chip illuminaHumanv4) assembled using data from public repositories.

r-idr2d 1.24.0
Dependencies: python@3.11.14
Propagated dependencies: r-stringr@1.6.0 r-scales@1.4.0 r-reticulate@1.44.1 r-magrittr@2.0.4 r-iranges@2.44.0 r-idr@1.3 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-futile-logger@1.4.3 r-dplyr@1.1.4
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://idr2d.mit.edu
Licenses: Expat
Build system: r
Synopsis: Irreproducible Discovery Rate for Genomic Interactions Data
Description:

This package provides a tool to measure reproducibility between genomic experiments that produce two-dimensional peaks (interactions between peaks), such as ChIA-PET, HiChIP, and HiC. idr2d is an extension of the original idr package, which is intended for (one-dimensional) ChIP-seq peaks.

r-illuminamousev2-db 1.26.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://bioconductor.org/packages/illuminaMousev2.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Illumina MouseWG6v2 annotation data (chip illuminaMousev2)
Description:

Illumina MouseWG6v2 annotation data (chip illuminaMousev2) assembled using data from public repositories.

r-imodmix 1.0.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://github.com/biodatalab/iModMix
Licenses: GPL 3
Build system: r
Synopsis: Integrative Modules for Multi-Omics Data
Description:

The iModMix network-based method offers an integrated framework for analyzing multi-omics data, including metabolomics, proteomics, and transcriptomics data, enabling the exploration of intricate molecular associations within heterogeneous biological systems.

r-iyer517 1.52.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://bioconductor.org/packages/Iyer517
Licenses: Artistic License 2.0
Build system: r
Synopsis: exprSets for Iyer, Eisen et all 1999 Science paper
Description:

representation of public Iyer data from http://genome-www.stanford.edu/serum/clusters.html.

r-infinityflow 1.20.2
Propagated dependencies: r-xgboost@1.7.11.1 r-uwot@0.2.4 r-raster@3.6-32 r-png@0.1-8 r-pbapply@1.7-4 r-matlab@1.0.4.1 r-gtools@3.9.5 r-generics@0.1.4 r-flowcore@2.22.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://bioconductor.org/packages/infinityFlow
Licenses: GPL 3
Build system: r
Synopsis: Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions
Description:

Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).

r-iggeneusage 1.24.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://github.com/snaketron/IgGeneUsage
Licenses: Expat
Build system: r
Synopsis: Differential gene usage in immune repertoires
Description:

Detection of biases in the usage of immunoglobulin (Ig) genes is an important task in immune repertoire profiling. IgGeneUsage detects aberrant Ig gene usage between biological conditions using a probabilistic model which is analyzed computationally by Bayes inference. With this IgGeneUsage also avoids some common problems related to the current practice of null-hypothesis significance testing.

r-intramirexplorer 1.32.0
Propagated dependencies: r-knitr@1.50 r-igraph@2.2.1 r-fgnet@3.44.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: https://github.com/VilainLab/IntramiRExploreR
Licenses: GPL 2
Build system: r
Synopsis: Predicting Targets for Drosophila Intragenic miRNAs
Description:

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

Total results: 2911