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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-mirnatap 1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/miRNAtap
Licenses: GPL 2
Build system: r
Synopsis: miRNAtap: microRNA Targets - Aggregated Predictions
Description:

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

r-mouse4302probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mouse4302probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type mouse4302
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Mouse430\_2\_probe\_tab.

r-mgu74b-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74b.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix MG_U74B Array annotation data (chip mgu74b)
Description:

Affymetrix Affymetrix MG_U74B Array annotation data (chip mgu74b) assembled using data from public repositories.

r-mogene-1-0-st-v1frmavecs 1.1.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene.1.0.st.v1frmavecs
Licenses: GPL 2+
Build system: r
Synopsis: Vectors used by frma for microarrays of type mogene.1.0.st.v1frmavecs
Description:

This package was created by frmaTools version 1.13.0.

r-mgu74bv2probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bv2probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type mgu74bv2
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Bv2\_probe\_tab.

r-msbackendrawfilereader 1.16.0
Propagated dependencies: r-spectra@1.20.0 r-s4vectors@0.48.0 r-rawrr@1.18.0 r-protgenerics@1.42.0 r-mscoreutils@1.21.0 r-iranges@2.44.0 r-biocparallel@1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/fgcz/MsBackendRawFileReader
Licenses: GPL 3
Build system: r
Synopsis: Mass Spectrometry Backend for Reading Thermo Fisher Scientific raw Files
Description:

implements a MsBackend for the Spectra package using Thermo Fisher Scientific's NewRawFileReader .Net libraries. The package is generalizing the functionality introduced by the rawrr package Methods defined in this package are supposed to extend the Spectra Bioconductor package.

r-mirnatarget 1.48.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/miRNATarget
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: gene target tabale of miRNA for human/mouse used for MiRaGE package
Description:

gene target tabale of miRNA for human/mouse used for MiRaGE package.

r-mmagilentdesign026655-db 3.2.3
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MmAgilentDesign026655.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655)
Description:

Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655) assembled using data from public repositories.

r-mta10transcriptcluster-db 8.8.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mta10transcriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix mta10 annotation data (chip mta10transcriptcluster)
Description:

Affymetrix mta10 annotation data (chip mta10transcriptcluster) assembled using data from public repositories.

r-mugaexampledata 1.30.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MUGAExampleData
Licenses: GPL 3
Build system: r
Synopsis: Example {M}ouse {U}niversal {G}enotyping {A}rray data for genome reconstruction and quantitative trait locus mapping
Description:

This package contains example data for the MUGA array that is used by the R package DOQTL.

r-modcon 1.18.0
Dependencies: perl@5.36.0
Propagated dependencies: r-data-table@1.17.8
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/caggtaagtat/ModCon
Licenses: FSDG-compatible
Build system: r
Synopsis: Modifying splice site usage by changing the mRNP code, while maintaining the genetic code
Description:

Collection of functions to calculate a nucleotide sequence surrounding for splice donors sites to either activate or repress donor usage. The proposed alternative nucleotide sequence encodes the same amino acid and could be applied e.g. in reporter systems to silence or activate cryptic splice donor sites.

r-methylgsa 1.28.0
Propagated dependencies: r-stringr@1.6.0 r-shiny@1.11.1 r-robustrankaggreg@1.2.1 r-reactome-db@1.94.0 r-org-hs-eg-db@3.22.0 r-missmethyl@1.44.0 r-illuminahumanmethylationepicanno-ilm10b4-hg19@0.6.0 r-illuminahumanmethylation450kanno-ilmn12-hg19@0.6.1 r-go-db@3.22.0 r-ggplot2@4.0.1 r-clusterprofiler@4.18.2 r-biocparallel@1.44.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/reese3928/methylGSA
Licenses: GPL 2
Build system: r
Synopsis: Gene Set Analysis Using the Outcome of Differential Methylation
Description:

The main functions for methylGSA are methylglm and methylRRA. methylGSA implements logistic regression adjusting number of probes as a covariate. methylRRA adjusts multiple p-values of each gene by Robust Rank Aggregation. For more detailed help information, please see the vignette.

r-microbiomebenchmarkdata 1.12.0
Propagated dependencies: r-treesummarizedexperiment@2.18.0 r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-biocfilecache@3.0.0 r-ape@5.8-1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/waldronlab/MicrobiomeBenchmarkData
Licenses: Artistic License 2.0
Build system: r
Synopsis: Datasets for benchmarking in microbiome research
Description:

The MicrobiomeBenchmarkData package provides functionality to access microbiome datasets suitable for benchmarking. These datasets have some biological truth, which allows to have expected results for comparison. The datasets come from various published sources and are provided as TreeSummarizedExperiment objects. Currently, only datasets suitable for benchmarking differential abundance methods are available.

r-mirna102xgaincdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mirna102xgaincdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mirna102xgaincdf
Description:

This package provides a package containing an environment representing the miRNA-1_0_2Xgain.CDF file.

r-mcseadata 1.30.0
Propagated dependencies: r-genomicranges@1.62.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mCSEAdata
Licenses: GPL 2
Build system: r
Synopsis: Data package for mCSEA package
Description:

Data objects necessary to some mCSEA package functions. There are also example data objects to illustrate mCSEA package functionality.

r-metnet 1.28.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MetNet
Licenses: GPL 3+
Build system: r
Synopsis: Inferring metabolic networks from untargeted high-resolution mass spectrometry data
Description:

MetNet contains functionality to infer metabolic network topologies from quantitative data and high-resolution mass/charge information. Using statistical models (including correlation, mutual information, regression and Bayes statistics) and quantitative data (intensity values of features) adjacency matrices are inferred that can be combined to a consensus matrix. Mass differences calculated between mass/charge values of features will be matched against a data frame of supplied mass/charge differences referring to transformations of enzymatic activities. In a third step, the two levels of information are combined to form a adjacency matrix inferred from both quantitative and structure information.

r-mircomp 1.40.0
Propagated dependencies: r-mircompdata@1.40.0 r-kernsmooth@2.23-26 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/miRcomp
Licenses: GPL 3 FSDG-compatible
Build system: r
Synopsis: Tools to assess and compare miRNA expression estimatation methods
Description:

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

r-mmdiff2 1.38.0
Propagated dependencies: r-shiny@1.11.1 r-s4vectors@0.48.0 r-rsamtools@2.26.0 r-rcolorbrewer@1.1-3 r-locfit@1.5-9.12 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-bsgenome@1.78.0 r-biostrings@2.78.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MMDiff2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Statistical Testing for ChIP-Seq data sets
Description:

This package detects statistically significant differences between read enrichment profiles in different ChIP-Seq samples. To take advantage of shape differences it uses Kernel methods (Maximum Mean Discrepancy, MMD).

r-magpie 1.10.0
Propagated dependencies: r-tress@1.16.0 r-s4vectors@0.48.0 r-rtracklayer@1.70.0 r-rsamtools@2.26.0 r-reshape2@1.4.5 r-rcolorbrewer@1.1-3 r-openxlsx@4.2.8.1 r-matrixstats@1.5.0 r-matrix@1.7-4 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomicfeatures@1.62.0 r-deseq2@1.50.2 r-biocparallel@1.44.0 r-aod@1.3.3 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/dxd429/magpie
Licenses: Expat
Build system: r
Synopsis: MeRIP-Seq data Analysis for Genomic Power Investigation and Evaluation
Description:

This package aims to perform power analysis for the MeRIP-seq study. It calculates FDR, FDC, power, and precision under various study design parameters, including but not limited to sample size, sequencing depth, and testing method. It can also output results into .xlsx files or produce corresponding figures of choice.

r-mcsea 1.30.1
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-mcseadata@1.30.0 r-limma@3.66.0 r-iranges@2.44.0 r-homo-sapiens@1.3.1 r-gviz@1.54.0 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-genomicfeatures@1.62.0 r-fgsea@1.36.0 r-biomart@2.66.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mCSEA
Licenses: GPL 2
Build system: r
Synopsis: Methylated CpGs Set Enrichment Analysis
Description:

Identification of diferentially methylated regions (DMRs) in predefined regions (promoters, CpG islands...) from the human genome using Illumina's 450K or EPIC microarray data. Provides methods to rank CpG probes based on linear models and includes plotting functions.

r-mgu74bv2-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bv2.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix MG_U74Bv2 Array annotation data (chip mgu74bv2)
Description:

Affymetrix Affymetrix MG_U74Bv2 Array annotation data (chip mgu74bv2) assembled using data from public repositories.

r-mgu74bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mgu74bcdf
Description:

This package provides a package containing an environment representing the MG_U74B.cdf file.

r-mirlab 1.40.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/pvvhoang/miRLAB
Licenses: FSDG-compatible
Build system: r
Synopsis: Dry lab for exploring miRNA-mRNA relationships
Description:

Provide tools exploring miRNA-mRNA relationships, including popular miRNA target prediction methods, ensemble methods that integrate individual methods, functions to get data from online resources, functions to validate the results, and functions to conduct enrichment analyses.

r-microbiomeexplorer 1.20.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/microbiomeExplorer
Licenses: Expat
Build system: r
Synopsis: Microbiome Exploration App
Description:

The MicrobiomeExplorer R package is designed to facilitate the analysis and visualization of marker-gene survey feature data. It allows a user to perform and visualize typical microbiome analytical workflows either through the command line or an interactive Shiny application included with the package. In addition to applying common analytical workflows the application enables automated analysis report generation.

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