_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-pd-margene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.margene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MarGene-1_0-st
Description:

Platform Design Info for Affymetrix MarGene-1_0-st.

r-past 1.26.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/IGBB/past
Licenses: FSDG-compatible
Build system: r
Synopsis: Pathway Association Study Tool (PAST)
Description:

PAST takes GWAS output and assigns SNPs to genes, uses those genes to find pathways associated with the genes, and plots pathways based on significance. Implements methods for reading GWAS input data, finding genes associated with SNPs, calculating enrichment score and significance of pathways, and plotting pathways.

r-ppinfer 1.36.0
Propagated dependencies: r-yeastexpdata@0.56.0 r-stringdb@2.22.0 r-kernlab@0.9-33 r-igraph@2.2.1 r-httr@1.4.7 r-ggplot2@4.0.1 r-fgsea@1.36.0 r-biomart@2.66.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PPInfer
Licenses: Artistic License 2.0
Build system: r
Synopsis: Inferring functionally related proteins using protein interaction networks
Description:

Interactions between proteins occur in many, if not most, biological processes. Most proteins perform their functions in networks associated with other proteins and other biomolecules. This fact has motivated the development of a variety of experimental methods for the identification of protein interactions. This variety has in turn ushered in the development of numerous different computational approaches for modeling and predicting protein interactions. Sometimes an experiment is aimed at identifying proteins closely related to some interesting proteins. A network based statistical learning method is used to infer the putative functions of proteins from the known functions of its neighboring proteins on a PPI network. This package identifies such proteins often involved in the same or similar biological functions.

r-pd-hta-2-0 3.12.2
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hta.2.0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix HTA-2_0
Description:

Platform Design Info for Affymetrix HTA-2_0.

r-pd-ath1-121501 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ath1.121501
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name ATH1-121501
Description:

Platform Design Info for The Manufacturer's Name ATH1-121501.

r-pd-felgene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.felgene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix FelGene-1_0-st
Description:

Platform Design Info for Affymetrix FelGene-1_0-st.

r-prone 1.4.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/daisybio/PRONE
Licenses: GPL 3+
Build system: r
Synopsis: The PROteomics Normalization Evaluator
Description:

High-throughput omics data are often affected by systematic biases introduced throughout all the steps of a clinical study, from sample collection to quantification. Normalization methods aim to adjust for these biases to make the actual biological signal more prominent. However, selecting an appropriate normalization method is challenging due to the wide range of available approaches. Therefore, a comparative evaluation of unnormalized and normalized data is essential in identifying an appropriate normalization strategy for a specific data set. This R package provides different functions for preprocessing, normalizing, and evaluating different normalization approaches. Furthermore, normalization methods can be evaluated on downstream steps, such as differential expression analysis and statistical enrichment analysis. Spike-in data sets with known ground truth and real-world data sets of biological experiments acquired by either tandem mass tag (TMT) or label-free quantification (LFQ) can be analyzed.

r-pumadata 2.46.0
Propagated dependencies: r-puma@3.52.0 r-oligo@1.74.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://umber.sbs.man.ac.uk/resources/puma
Licenses: LGPL 2.0+
Build system: r
Synopsis: Various data sets for use with the puma package
Description:

This is a simple data package including various data sets derived from the estrogen data for use with the puma (Propagating Uncertainty in Microarray Analysis) package.

r-pd-hg-focus 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.focus
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG-Focus
Description:

Platform Design Info for The Manufacturer's Name HG-Focus.

r-peakpanther 1.24.0
Propagated dependencies: r-xml@3.99-0.20 r-svglite@2.2.2 r-stringr@1.6.0 r-shinycssloaders@1.1.0 r-shiny@1.11.1 r-scales@1.4.0 r-pracma@2.4.6 r-mzr@2.44.0 r-msnbase@2.36.0 r-minpack-lm@1.2-4 r-lubridate@1.9.4 r-gridextra@2.3 r-ggplot2@4.0.1 r-foreach@1.5.2 r-dt@0.34.0 r-doparallel@1.0.17 r-bslib@0.9.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/phenomecentre/peakPantheR
Licenses: GPL 3
Build system: r
Synopsis: Peak Picking and Annotation of High Resolution Experiments
Description:

An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files. It enables the real time annotation of multiple compounds in a single file, or the parallel annotation of multiple compounds in multiple files. A graphical user interface as well as command line functions will assist in assessing the quality of annotation and update fitting parameters until a satisfactory result is obtained.

r-pd-clariom-d-human 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.clariom.d.human
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Clariom_D_Human
Description:

Platform Design Info for Affymetrix Clariom_D_Human.

r-prostatecancergrasso 1.38.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/prostateCancerGrasso
Licenses: Artistic License 2.0
Build system: r
Synopsis: Prostate Cancer Data
Description:

This package provides a Bioconductor data package for the Grasso (2012) Prostate Cancer dataset.

r-phenotest 1.58.0
Propagated dependencies: r-xtable@1.8-4 r-survival@3.8-3 r-mgcv@1.9-4 r-limma@3.66.0 r-hopach@2.70.0 r-hmisc@5.2-4 r-hgu133a-db@3.13.0 r-heatplus@3.18.0 r-gseabase@1.72.0 r-gplots@3.2.0 r-ggplot2@4.0.1 r-genefilter@1.92.0 r-ellipse@0.5.0 r-category@2.76.0 r-bma@3.18.20 r-biomart@2.66.0 r-biobase@2.70.0 r-annotationdbi@1.72.0 r-annotate@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/phenoTest
Licenses: FSDG-compatible
Build system: r
Synopsis: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation
Description:

This package provides tools to test correlation between gene expression and phenotype in a way that is efficient, structured, fast and scalable. GSEA is also provided.

r-pd-rn-u34 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rn.u34
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name RN_U34
Description:

Platform Design Info for The Manufacturer's Name RN_U34.

r-plotgardenerdata 1.16.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/PhanstielLab/plotgardenerData
Licenses: Expat
Build system: r
Synopsis: Datasets and test data files for the plotgardener package
Description:

This is a supplemental data package for the plotgardener package. Includes example datasets used in plotgardener vignettes and example raw data files. For details on how to use these datasets, see the plotgardener package vignettes.

r-pd-canine-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.canine.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Canine_2
Description:

Platform Design Info for The Manufacturer's Name Canine_2.

r-pd-mirna-3-1 3.8.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.3.1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix miRNA-3_1
Description:

Platform Design Info for Affymetrix miRNA-3_1.

r-pd-plasmodium-anopheles 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.plasmodium.anopheles
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles
Description:

Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles.

r-predasampledata 0.50.0
Propagated dependencies: r-preda@1.56.0 r-biobase@2.70.0 r-annotate@1.88.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PREDAsampledata
Licenses: Artistic License 2.0
Build system: r
Synopsis: expression and copy number data on clear cell renal carcinoma samples
Description:

Sample data for PREDA package. (annotations objects synchronized with GeneAnnot custom CDFs version 2.2.0).

r-pd-ag 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ag
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name AG
Description:

Platform Design Info for The Manufacturer's Name AG.

r-pgca 1.34.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pgca
Licenses: GPL 2+
Build system: r
Synopsis: PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data
Description:

Protein Group Code Algorithm (PGCA) is a computationally inexpensive algorithm to merge protein summaries from multiple experimental quantitative proteomics data. The algorithm connects two or more groups with overlapping accession numbers. In some cases, pairwise groups are mutually exclusive but they may still be connected by another group (or set of groups) with overlapping accession numbers. Thus, groups created by PGCA from multiple experimental runs (i.e., global groups) are called "connected" groups. These identified global protein groups enable the analysis of quantitative data available for protein groups instead of unique protein identifiers.

r-pd-mogene-2-1-st 3.14.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mogene.2.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MoGene-2_1-st
Description:

Platform Design Info for Affymetrix MoGene-2_1-st.

r-profilescoredist 1.38.0
Propagated dependencies: r-rcpp@1.1.0 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/profileScoreDist
Licenses: Expat
Build system: r
Synopsis: Profile score distributions
Description:

Regularization and score distributions for position count matrices.

r-pd-drogene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.drogene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix DroGene-1_0-st
Description:

Platform Design Info for Affymetrix DroGene-1_0-st.

Total results: 2911