_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-preda 1.56.0
Propagated dependencies: r-multtest@2.66.0 r-lokern@1.1-12 r-biobase@2.70.0 r-annotate@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PREDA
Licenses: GPL 2
Build system: r
Synopsis: Position Related Data Analysis
Description:

Package for the position related analysis of quantitative functional genomics data.

r-pd-cangene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.cangene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix CanGene-1_0-st
Description:

Platform Design Info for Affymetrix CanGene-1_0-st.

r-pd-mirna-3-0 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.3.0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix miRNA-3_0
Description:

Platform Design Info for Affymetrix miRNA-3_0.

r-poma 1.20.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/pcastellanoescuder/POMA
Licenses: GPL 3
Build system: r
Synopsis: Tools for Omics Data Analysis
Description:

The POMA package offers a comprehensive toolkit designed for omics data analysis, streamlining the process from initial visualization to final statistical analysis. Its primary goal is to simplify and unify the various steps involved in omics data processing, making it more accessible and manageable within a single, intuitive R package. Emphasizing on reproducibility and user-friendliness, POMA leverages the standardized SummarizedExperiment class from Bioconductor, ensuring seamless integration and compatibility with a wide array of Bioconductor tools. This approach guarantees maximum flexibility and replicability, making POMA an essential asset for researchers handling omics datasets. See https://github.com/pcastellanoescuder/POMAShiny. Paper: Castellano-Escuder et al. (2021) <doi:10.1371/journal.pcbi.1009148> for more details.

r-polytect 1.2.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/emmachenlingo/Polytect
Licenses: Artistic License 2.0
Build system: r
Synopsis: An R package for digital data clustering
Description:

Polytect is an advanced computational tool designed for the analysis of multi-color digital PCR data. It provides automatic clustering and labeling of partitions into distinct groups based on clusters first identified by the flowPeaks algorithm. Polytect is particularly useful for researchers in molecular biology and bioinformatics, enabling them to gain deeper insights into their experimental results through precise partition classification and data visualization.

r-pd-elegene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.elegene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix EleGene-1_0-st
Description:

Platform Design Info for Affymetrix EleGene-1_0-st.

r-pd-hg-u95a 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95A
Description:

Platform Design Info for The Manufacturer's Name HG_U95A.

r-pd-ht-hg-u133a 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ht.hg.u133a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HT_HG-U133A
Description:

Platform Design Info for The Manufacturer's Name HT_HG-U133A.

r-pd-rice 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rice
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Rice
Description:

Platform Design Info for The Manufacturer's Name Rice.

r-planttfhunter 1.10.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/almeidasilvaf/planttfhunter
Licenses: GPL 3
Build system: r
Synopsis: Identification and classification of plant transcription factors
Description:

planttfhunter is used to identify plant transcription factors (TFs) from protein sequence data and classify them into families and subfamilies using the classification scheme implemented in PlantTFDB. TFs are identified using pre-built hidden Markov model profiles for DNA-binding domains. Then, auxiliary and forbidden domains are used with DNA-binding domains to classify TFs into families and subfamilies (when applicable). Currently, TFs can be classified in 58 different TF families/subfamilies.

r-pd-mg-u74a 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mg.u74a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name MG_U74A
Description:

Platform Design Info for The Manufacturer's Name MG_U74A.

r-plpe 1.70.0
Propagated dependencies: r-mass@7.3-65 r-lpe@1.84.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://www.korea.ac.kr/~stat2242/
Licenses: GPL 2+
Build system: r
Synopsis: Local Pooled Error Test for Differential Expression with Paired High-throughput Data
Description:

This package performs tests for paired high-throughput data.

r-pd-rhesus 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rhesus
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Rhesus
Description:

Platform Design Info for The Manufacturer's Name Rhesus.

r-proteinprofiles 1.50.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/proteinProfiles
Licenses: GPL 3
Build system: r
Synopsis: Protein Profiling
Description:

Significance assessment for distance measures of time-course protein profiles.

r-pd-cyrgene-1-1-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.cyrgene.1.1.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix CyRGene-1_1-st
Description:

Platform Design Info for Affymetrix CyRGene-1_1-st.

r-planet 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://github.com/wvictor14/planet
Licenses: GPL 2
Build system: r
Synopsis: Placental DNA methylation analysis tools
Description:

This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.

r-pd-hg-u95b 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.hg.u95b
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95B
Description:

Platform Design Info for The Manufacturer's Name HG_U95B.

r-pairedgsea 1.10.0
Propagated dependencies: r-sva@3.58.0 r-summarizedexperiment@1.40.0 r-showtext@0.9-7 r-s4vectors@0.48.0 r-msigdbr@25.1.1 r-limma@3.66.0 r-ggplot2@4.0.1 r-fgsea@1.36.0 r-dexseq@1.56.0 r-deseq2@1.50.2 r-biocparallel@1.44.0 r-aggregation@1.0.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/shdam/pairedGSEA
Licenses: Expat
Build system: r
Synopsis: Paired DGE and DGS analysis for gene set enrichment analysis
Description:

pairedGSEA makes it simple to run a paired Differential Gene Expression (DGE) and Differencital Gene Splicing (DGS) analysis. The package allows you to store intermediate results for further investiation, if desired. pairedGSEA comes with a wrapper function for running an Over-Representation Analysis (ORA) and functionalities for plotting the results.

r-pd-cytogenetics-array 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.cytogenetics.array
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix Cytogenetics_Array
Description:

Platform Design Info for Affymetrix Cytogenetics_Array.

r-panther-db 1.0.12
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PANTHER.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: set of annotation maps describing the entire PANTHER Gene Ontology
Description:

This package provides a set of annotation maps describing the entire Gene Ontology assembled using data from PANTHER.

r-prone 1.4.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/daisybio/PRONE
Licenses: GPL 3+
Build system: r
Synopsis: The PROteomics Normalization Evaluator
Description:

High-throughput omics data are often affected by systematic biases introduced throughout all the steps of a clinical study, from sample collection to quantification. Normalization methods aim to adjust for these biases to make the actual biological signal more prominent. However, selecting an appropriate normalization method is challenging due to the wide range of available approaches. Therefore, a comparative evaluation of unnormalized and normalized data is essential in identifying an appropriate normalization strategy for a specific data set. This R package provides different functions for preprocessing, normalizing, and evaluating different normalization approaches. Furthermore, normalization methods can be evaluated on downstream steps, such as differential expression analysis and statistical enrichment analysis. Spike-in data sets with known ground truth and real-world data sets of biological experiments acquired by either tandem mass tag (TMT) or label-free quantification (LFQ) can be analyzed.

r-pd-canine 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.canine
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Canine
Description:

Platform Design Info for The Manufacturer's Name Canine.

r-pgca 1.34.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pgca
Licenses: GPL 2+
Build system: r
Synopsis: PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data
Description:

Protein Group Code Algorithm (PGCA) is a computationally inexpensive algorithm to merge protein summaries from multiple experimental quantitative proteomics data. The algorithm connects two or more groups with overlapping accession numbers. In some cases, pairwise groups are mutually exclusive but they may still be connected by another group (or set of groups) with overlapping accession numbers. Thus, groups created by PGCA from multiple experimental runs (i.e., global groups) are called "connected" groups. These identified global protein groups enable the analysis of quantitative data available for protein groups instead of unique protein identifiers.

r-pepstat 1.44.0
Propagated dependencies: r-plyr@1.8.9 r-limma@3.66.0 r-iranges@2.44.0 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-fields@17.1 r-data-table@1.17.8 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/RGLab/pepStat
Licenses: Artistic License 2.0
Build system: r
Synopsis: Statistical analysis of peptide microarrays
Description:

Statistical analysis of peptide microarrays.

Total results: 2911