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Platform Design Info for The Manufacturer's Name HG-Focus.
This package provides a package containing an environment representing the Poplar.cdf file.
Platform Design Info for The Manufacturer's Name RG_U34A.
Platform Design Info for Affymetrix FinGene-1_0-st.
Platform Design Info for Affymetrix Clariom_S_Mouse.
Platform Design Info for NimbleGen hg18_60mer_expr.
Platform Design Info for The Manufacturer's Name E_coli_2.
Platform Design Info for The Manufacturer's Name HT_MG-430A.
Platform Design Info for The Manufacturer's Name X_tropicalis.
Platform Design Info for The Manufacturer's Name MG_U74A.
This package provides functions to Analyze Microarray (Gene Expression) Data.
Platform Design Info for Affymetrix MoEx-1_0-st-v1.
PhantasusLite – a lightweight package with helper functions of general interest extracted from phantasus package. In parituclar it simplifies working with public RNA-seq datasets from GEO by providing access to the remote HSDS repository with the precomputed gene counts from ARCHS4 and DEE2 projects.
Platform Design Info for Affymetrix CynGene-1_1-st.
Platform Design Info for The Manufacturer's Name HG_U95C.
Platform Design Info for Affymetrix GuiGene-1_1-st.
Platform Design Info for The Manufacturer's Name Barley1.
Platform Design Info for The Manufacturer's Name ATH1-121501.
This package provides tools for large-scale protein motif analysis and visualization in R. PMScanR facilitates the identification of motifs using external tools like PROSITE's ps_scan (handling necessary file downloads and execution) and enables downstream analysis of results. Key features include parsing scan outputs, converting formats (e.g., to GFF-like structures), generating motif occurrence matrices, and creating informative visualizations such as heatmaps, sequence logos (via seqLogo/ggseqlogo). The package also offers an optional Shiny-based graphical user interface for interactive analysis, aiming to streamline the process of exploring motif patterns across multiple protein sequences.
Platform Design Info for Affymetrix EquGene-1_1-st.
Platform Design Info for The Manufacturer's Name HT_HG-U133A.
Platform Design Info for The Manufacturer's Name AG.
Platform Design Info for Affymetrix Clariom_S_Human.
PrInCE (Predicting Interactomes from Co-Elution) uses a naive Bayes classifier trained on dataset-derived features to recover protein-protein interactions from co-elution chromatogram profiles. This package contains the R implementation of PrInCE.