This package provides a LaTeX Letter class for rmarkdown', using the pandoc-letter template adapted for use with markdown'.

When the values of the outcome variable Y are either 0 or 1, the function lsm() calculates the estimation of the log likelihood in the saturated model. This model is characterized by Llinas (2006, ISSN:2389-8976) in section 2.3 through the assumptions 1 and 2. The function LogLik() works (almost perfectly) when the number of independent variables K is high, but for small K it calculates wrong values in some cases. For this reason, when Y is dichotomous and the data are grouped in J populations, it is recommended to use the function lsm() because it works very well for all K.

This package provides fast and scalable Gibbs sampling algorithms for Bayesian Lasso regression model in high-dimensional settings. The package implements efficient partially collapsed and nested Gibbs samplers for Bayesian Lasso, with a focus on computational efficiency when the number of predictors is large relative to the sample size. Methods are described at Davoudabadi and Ormerod (2026) <https://github.com/MJDavoudabadi/LassoHiDFastGibbs>.

Efficient procedures for fitting the regularization path for linear, binomial, multinomial, Ising and Potts models with lasso, group lasso or column lasso(only for multinomial) penalty. The package uses Linearized Bregman Algorithm to solve the regularization path through iterations. Bregman Inverse Scale Space Differential Inclusion solver is also provided for linear model with lasso penalty.

This package provides lightweight, dependency-minimal implementations of Langevin diffusion based Markov chain Monte Carlo samplers, including the Unadjusted Langevin Algorithm (ULA) and the Metropolis-Adjusted Langevin Algorithm (MALA). The core sampling loops are written in C++ via Rcpp and RcppArmadillo for performance, while exposing a simple R-level interface where the user supplies the gradient of the negative log-density (and, for MALA, the negative log-density itself). Intended as a building block for Bayesian inference and stochastic optimization rather than a full probabilistic programming framework. Methods follow Roberts and Tweedie (1996) <doi:10.2307/3318418> and Roberts and Rosenthal (1998) <doi:10.1111/1467-9868.00123>.

This package implements Expectation/Conditional Maximization Either (ECME), rapidly converging algorithms, and Bayesian inference for linear mixed models following Schafer (1998), "Some Improved Procedures for Linear Mixed Models", Department of Statistics, The Pennsylvania State University.

Fit linear models based on periodic splines, moderate model coefficients using multivariate adaptive shrinkage, then compute properties of the moderated curves.

This package provides functions for fitting a functional principal components logit regression model in four different situations: ordinary and filtered functional principal components of functional predictors, included in the model according to their variability explanation power, and according to their prediction ability by stepwise methods. The proposed methods were developed in Escabias et al (2004) <doi:10.1080/10485250310001624738> and Escabias et al (2005) <doi:10.1016/j.csda.2005.03.011>.

Approximate marginal maximum likelihood estimation of multidimensional latent variable models via adaptive quadrature or Laplace approximations to the integrals in the likelihood function, as presented for confirmatory factor analysis models in Jin, S., Noh, M., and Lee, Y. (2018) <doi:10.1080/10705511.2017.1403287>, for item response theory models in Andersson, B., and Xin, T. (2021) <doi:10.3102/1076998620945199>, and for generalized linear latent variable models in Andersson, B., Jin, S., and Zhang, M. (2023) <doi:10.1016/j.csda.2023.107710>. Models implemented include the generalized partial credit model, the graded response model, and generalized linear latent variable models for Poisson, negative-binomial and normal distributions. Supports a combination of binary, ordinal, count and continuous observed variables and multiple group models.

This package provides smooth approximations to the L0 norm penalty for estimating sparse Gaussian graphical models (GGMs). Network estimation is performed using the Local Linear Approximation (LLA) framework (Fan & Li, 2001 <doi:10.1198/016214501753382273>; Zou & Li, 2008 <doi:10.1214/009053607000000802>) with five penalty functions: arctangent (Wang & Zhu, 2016 <doi:10.1155/2016/6495417>), EXP (Wang, Fan, & Zhu, 2018 <doi:10.1007/s10463-016-0588-3>), Gumbel, Log (Candes, Wakin, & Boyd, 2008 <doi:10.1007/s00041-008-9045-x>), and Weibull. Adaptive penalty parameters for EXP, Gumbel, and Weibull are estimated via maximum likelihood, and model selection uses information criteria including AIC, BIC, and EBIC (Extended BIC). Simulation functions generate multivariate normal data from GGMs with stochastic block model or small-world (Watts-Strogatz) network structures.

Aids in learning statistical functions incorporating the result of calculus done with each function and how they are obtained, that is, which equation and variables are used. Also for all these equations and their related variables detailed explanations and interactive exercises are also included. All these characteristics allow to the package user to improve the learning of statistics basics by means of their use.

This package provides functions for the implementation of a density goodness-of-fit test, based on piecewise approximation of the L2 distance.

Estimate the slope and intercept of a bivariate linear relationship by calculating a posterior density that is invariant to interchange and scaling of the coordinates.

Fit right censored Multiple Ordinal Tobit (MOT) model.

This package provides a simple progress bar showing estimated remaining time. Multiple forecast methods and user defined forecast method for the remaining time are supported.

This package provides a flexible and easy-to use interface for the soil vegetation atmosphere transport (SVAT) model LWF-BROOK90, written in Fortran. The model simulates daily transpiration, interception, soil and snow evaporation, streamflow and soil water fluxes through a soil profile covered with vegetation, as described in Hammel & Kennel (2001, ISBN:978-3-933506-16-0) and Federer et al. (2003) <doi:10.1175/1525-7541(2003)004%3C1276:SOAETS%3E2.0.CO;2>. A set of high-level functions for model set up, execution and parallelization provides easy access to plot-level SVAT simulations, as well as multi-run and large-scale applications.

Extensive functions for Lmoments (LMs) and probability-weighted moments (PWMs), distribution parameter estimation, LMs for distributions, LM ratio diagrams, multivariate Lcomoments, and asymmetric (asy) trimmed LMs (TLMs). Maximum likelihood and maximum product spacings estimation are available. Right-tail and left-tail LM censoring by threshold or indicator variable are available. LMs of residual (resid) and reversed (rev) residual life are implemented along with 13 quantile operators for reliability analyses. Exact analytical bootstrap estimates of order statistics, LMs, and LM var-covars are available. Harri-Coble Tau34-squared Normality Test is available. Distributions with L, TL, and added (+) support for right-tail censoring (RC) encompass: Asy Exponential (Exp) Power [L], Asy Triangular [L], Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp Poisson [L], Gen Extreme Value [L], Gen Lambda [L, TL], Gen Logistic [L], Gen Normal [L], Gen Pareto [L+RC, TL], Govindarajulu [L], Gumbel [L], Kappa [L], Kappa-Mu [L], Kumaraswamy [L], Laplace [L], Linear Mean Residual Quantile Function [L], Normal [L], 3p log-Normal [L], Pearson Type III [L], Polynomial Density-Quantile 3 and 4 [L], Rayleigh [L], Rev-Gumbel [L+RC], Rice [L], Singh Maddala [L], Slash [TL], 3p Student t [L], Truncated Exponential [L], Wakeby [L], and Weibull [L].

This package provides a shiny application to construct age-specific life tables and fertility schedules from individual female daily egg records. The application computes age-specific survival and fertility functions and estimates key demographic parameters including the net reproductive rate, mean generation time, intrinsic rate of increase, finite rate of increase and doubling time. Optional confidence intervals can be obtained using percentile bootstrap or delete-1 jackknife resampling at the female level. Methods and definitions follow Stevens (2009) <doi:10.1007/978-0-387-89882-7> and Rossini et al. (2024) <doi:10.1371/journal.pone.0299598>.

This package provides a very simple implementation of a class for longitudinal data.

Create custom labels, badges, certificates and other documents. Automate the production of potentially large numbers of herbarium and collection labels, accreditation badges, attendance and participation certificates, etc, and deliver them automatically. Documents are generated in PDF format, which requires a working installation of LaTeX', such as TinyTeX'.

Conducting Line transect-based one-dimensional nearest neighbor distance and conducting hypothesis testing related to local distributional aggregation pattern of species. The reason that such a package is needed is because traditional two-dimensional nearest neighbor distance is not applicable when biodiversity data are sampled via optimal ecological survey methods, like line transects. In comparison to the entire studied region, line transect-collected local biodiversity data are spatially constrained and sampling-limited. To this end, two-dimensional nearest neighbor distance would tend to over-estimate distributional aggregation pattern of species when using this limited biodiversity information. Accordingly, one-dimensional nearest neighbor distance is needed and the associated statistical testing should be established for analyzing line transect-derived biodiversity data.

This is a Neural Network regression model implementation using Keras', consisting of 10 Long Short-Term Memory layers that are fully connected along with the rest of the inputs.

Select statistically similar research groups by backward selection using various robust algorithms, including a heuristic based on linear discriminant analysis, multiple heuristics based on the test statistic, and parallelized exhaustive search.

This package creates lowpass filters which are commonly used in ion channel recordings. It supports generation of random numbers that are filtered, i.e. follow a model for ion channel recordings, see <doi:10.1109/TNB.2018.2845126>. Furthermore, time continuous convolutions of piecewise constant signals with the kernel of lowpass filters can be computed.