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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-spcov 1.3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=spcov
Licenses: GPL 2
Build system: r
Synopsis: Sparse Estimation of a Covariance Matrix
Description:

This package provides a covariance estimator for multivariate normal data that is sparse and positive definite. Implements the majorize-minimize algorithm described in Bien, J., and Tibshirani, R. (2011), "Sparse Estimation of a Covariance Matrix," Biometrika. 98(4). 807--820.

r-scdhlm 0.7.4
Propagated dependencies: r-tidyselect@1.2.1 r-rlang@1.1.6 r-readxl@1.4.5 r-nlme@3.1-168 r-magrittr@2.0.4 r-lmeinfo@0.3.2 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://jepusto.github.io/scdhlm/
Licenses: GPL 3
Build system: r
Synopsis: Estimating Hierarchical Linear Models for Single-Case Designs
Description:

This package provides a set of tools for estimating hierarchical linear models and effect sizes based on data from single-case designs. Functions are provided for calculating standardized mean difference effect sizes that are directly comparable to standardized mean differences estimated from between-subjects randomized experiments, as described in Hedges, Pustejovsky, and Shadish (2012) <DOI:10.1002/jrsm.1052>; Hedges, Pustejovsky, and Shadish (2013) <DOI:10.1002/jrsm.1086>; Pustejovsky, Hedges, and Shadish (2014) <DOI:10.3102/1076998614547577>; and Chen, Pustejovsky, Klingbeil, and Van Norman (2023) <DOI:10.1016/j.jsp.2023.02.002>. Includes an interactive web interface.

r-spdynmod 1.1.6
Propagated dependencies: r-sp@2.2-0 r-raster@3.6-32 r-desolve@1.40 r-animation@2.8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/javimarlop/spdynmod
Licenses: GPL 2+
Build system: r
Synopsis: Spatio-Dynamic Wetland Plant Communities Model
Description:

This package provides a spatio-dynamic modelling package that focuses on three characteristic wetland plant communities in a semiarid Mediterranean wetland in response to hydrological pressures from the catchment. The package includes the data on watershed hydrological pressure and the initial raster maps of plant communities but also allows for random initial distribution of plant communities. For more detailed info see: Martinez-Lopez et al. (2015) <doi:10.1016/j.ecolmodel.2014.11.024>.

r-sgdgmf 1.0.1
Propagated dependencies: r-viridislite@0.4.2 r-suppdists@1.1-9.9 r-rspectra@0.16-2 r-reshape2@1.4.5 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-mass@7.3-65 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-generics@0.1.4 r-foreach@1.5.2 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/CristianCastiglione/sgdGMF
Licenses: Expat
Build system: r
Synopsis: Estimation of Generalized Matrix Factorization Models via Stochastic Gradient Descent
Description:

Efficient framework to estimate high-dimensional generalized matrix factorization models using penalized maximum likelihood under a dispersion exponential family specification. Either deterministic and stochastic methods are implemented for the numerical maximization. In particular, the package implements the stochastic gradient descent algorithm with a block-wise mini-batch strategy to speed up the computations and an efficient adaptive learning rate schedule to stabilize the convergence. All the theoretical details can be found in Castiglione et al. (2024, <doi:10.48550/arXiv.2412.20509>). Other methods considered for the optimization are the alternated iterative re-weighted least squares and the quasi-Newton method with diagonal approximation of the Fisher information matrix discussed in Kidzinski et al. (2022, <http://jmlr.org/papers/v23/20-1104.html>).

r-smncensreg 3.1
Propagated dependencies: r-performanceanalytics@2.0.8 r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SMNCensReg
Licenses: GPL 3+
Build system: r
Synopsis: Fitting Univariate Censored Regression Model Under the Family of Scale Mixture of Normal Distributions
Description:

Fit univariate right, left or interval censored regression model under the scale mixture of normal distributions.

r-scellpam 1.4.6.2
Propagated dependencies: r-rcpp@1.1.0 r-memuse@4.2-3 r-cluster@2.1.8.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=scellpam
Licenses: GPL 2+
Build system: r
Synopsis: Applying Partitioning Around Medoids to Single Cell Data with High Number of Cells
Description:

PAM (Partitioning Around Medoids) algorithm application to samples of single cell sequencing techniques with a high number of cells (as many as the computer memory allows). The package uses a binary format to store matrices (either full, sparse or symmetric) in files written in the disk that can contain any data type (not just double) which allows its manipulation when memory is sufficient to load them as int or float, but not as double. The PAM implementation is done in parallel, using several/all the cores of the machine, if it has them. This package shares a great part of its code with packages jmatrix and parallelpam but their functionality is included here so there is no need to install them.

r-sqlscore 0.1.4
Propagated dependencies: r-dbplyr@2.5.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/wwbrannon/sqlscore/
Licenses: Expat
Build system: r
Synopsis: Utilities for Generating SQL Queries from Model Objects
Description:

This package provides utilities for generating SQL queries (particularly CREATE TABLE statements) from R model objects. The most important use case is generating SQL to score a generalized linear model or related model represented as an R object, in which case the package handles parsing formula operators and including the model's response function.

r-sea 2.0.1
Propagated dependencies: r-shiny@1.11.1 r-mass@7.3-65 r-kscorrect@1.4.0 r-foreach@1.5.2 r-doparallel@1.0.17 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SEA
Licenses: GPL 2+
Build system: r
Synopsis: Segregation Analysis
Description:

This package provides a few major genes and a series of polygene are responsive for each quantitative trait. Major genes are individually identified while polygene is collectively detected. This is mixed major genes plus polygene inheritance analysis or segregation analysis (SEA). In the SEA, phenotypes from a single or multiple bi-parental segregation populations along with their parents are used to fit all the possible models and the best model of the trait for population phenotypic distributions is viewed as the model of the trait. There are fourteen types of population combinations available. Zhang Yuan-Ming, Gai Jun-Yi, Yang Yong-Hua (2003, <doi:10.1017/S0016672303006141>).

r-strvalidator 2.4.2
Propagated dependencies: r-scales@1.4.0 r-plyr@1.8.9 r-plotly@4.11.0 r-mass@7.3-65 r-gwidgets2tcltk@1.0-9 r-gwidgets2@1.0-10 r-gtable@0.3.6 r-gridextra@2.3 r-ggplot2@4.0.1 r-dt@0.34.0 r-dplyr@1.1.4 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://sites.google.com/site/forensicapps/strvalidator
Licenses: GPL 2
Build system: r
Synopsis: Process Control and Validation of Forensic STR Kits
Description:

An open source platform for validation and process control. Tools to analyze data from internal validation of forensic short tandem repeat (STR) kits are provided. The tools are developed to provide the necessary data to conform with guidelines for internal validation issued by the European Network of Forensic Science Institutes (ENFSI) DNA Working Group, and the Scientific Working Group on DNA Analysis Methods (SWGDAM). A front-end graphical user interface is provided. More information about each function can be found in the respective help documentation.

r-survdnn 0.7.5
Propagated dependencies: r-torch@0.16.3 r-tidyr@1.3.1 r-tibble@3.3.0 r-survival@3.8-3 r-rsample@1.3.1 r-purrr@1.2.0 r-glue@1.8.0 r-ggplot2@4.0.1 r-dplyr@1.1.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/ielbadisy/survdnn
Licenses: Expat
Build system: r
Synopsis: Deep Neural Networks for Survival Analysis with R 'torch'
Description:

This package provides deep learning models for right-censored survival data using the torch backend. Supports multiple loss functions, including Cox partial likelihood, L2-penalized Cox, time-dependent Cox, and accelerated failure time (AFT) loss. Offers a formula-based interface, built-in support for cross-validation, hyperparameter tuning, survival curve plotting, and evaluation metrics such as the C-index, Brier score, and integrated Brier score. For methodological details, see Kvamme et al. (2019) <https://www.jmlr.org/papers/v20/18-424.html>.

r-semnetdictionaries 0.2.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/AlexChristensen/SemNetDictionaries
Licenses: GPL 3+
Build system: r
Synopsis: Dictionaries for the 'SemNetCleaner' Package
Description:

This package implements dictionaries that can be used in the SemNetCleaner package. Also includes several functions aimed at facilitating the text cleaning analysis in the SemNetCleaner package. This package is designed to integrate and update word lists and dictionaries based on each user's individual needs by allowing users to store and save their own dictionaries. Dictionaries can be added to the SemNetDictionaries package by submitting user-defined dictionaries to <https://github.com/AlexChristensen/SemNetDictionaries>.

r-sorocs 0.1.0
Propagated dependencies: r-mvtnorm@1.3-3 r-mcmcpack@1.7-1 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: http://github.com/wzhang17/sorocs.git
Licenses: GPL 3
Build system: r
Synopsis: Bayesian Semiparametric Approach to Correlated ROC Surfaces
Description:

This package provides a Bayesian semiparametric Dirichlet process mixtures to estimate correlated receiver operating characteristic (ROC) surfaces and the associated volume under the surface (VUS) with stochastic order constraints. The reference paper is:Zhen Chen, Beom Seuk Hwang, (2018) "A Bayesian semiparametric approach to correlated ROC surfaces with stochastic order constraints". Biometrics, 75, 539-550. <doi:10.1111/biom.12997>.

r-seastests 0.15.4
Propagated dependencies: r-zoo@1.8-14 r-xts@0.14.1 r-forecast@8.24.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=seastests
Licenses: GPL 3
Build system: r
Synopsis: Seasonality Tests
Description:

An overall test for seasonality of a given time series in addition to a set of individual seasonality tests as described by Ollech and Webel (forthcoming): An overall seasonality test. Bundesbank Discussion Paper.

r-semptools 0.3.2
Propagated dependencies: r-semplot@1.1.7 r-rlang@1.1.6 r-lavaan@0.6-20
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://sfcheung.github.io/semptools/
Licenses: GPL 3
Build system: r
Synopsis: Customizing Structural Equation Modelling Plots
Description:

Most function focus on specific ways to customize a graph. They use a qgraph output as the first argument, and return a modified qgraph object. This allows the functions to be chained by a pipe operator.

r-sparsesurv 0.1.1
Dependencies: jags@4.3.1
Propagated dependencies: r-r2jags@0.8-9 r-coda@0.19-4.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/alexangelakis-ang/sparsesurv
Licenses: GPL 3+
Build system: r
Synopsis: Forecasting and Early Outbreak Detection for Sparse Count Data
Description:

This package provides functions for fitting, forecasting, and early detection of outbreaks in sparse surveillance count time series. Supports negative binomial (NB), self-exciting NB, generalise autoregressive moving average (GARMA) NB , zero-inflated NB (ZINB), self-exciting ZINB, generalise autoregressive moving average ZINB, and hurdle formulations. Climatic and environmental covariates can be included in the regression component and/or the zero-modified components. Includes outbreak-detection algorithms for NB, ZINB, and hurdle models, with utilities for prediction and diagnostics.

r-shinydatetimepickers 1.2.0
Propagated dependencies: r-shiny@1.11.1 r-reactr@0.6.1 r-lubridate@1.9.4 r-htmltools@0.5.8.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/stla/shinyDatetimePickers
Licenses: GPL 3
Build system: r
Synopsis: Some Datetime Pickers for 'Shiny'
Description:

This package provides three types of datetime pickers for usage in a Shiny UI. A datetime picker is an input field for selecting both a date and a time.

r-solar 0.47
Propagated dependencies: r-zoo@1.8-14 r-rcolorbrewer@1.1-3 r-latticeextra@0.6-31 r-lattice@0.22-7
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://oscarperpinan.codeberg.page/solar/
Licenses: GPL 3
Build system: r
Synopsis: Radiation and Photovoltaic Systems
Description:

Calculation methods of solar radiation and performance of photovoltaic systems from daily and intradaily irradiation data sources.

r-sda 1.3.9
Propagated dependencies: r-fdrtool@1.2.18 r-entropy@1.3.2 r-corpcor@1.6.10
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://strimmerlab.github.io/software/sda/
Licenses: GPL 3+
Build system: r
Synopsis: Shrinkage Discriminant Analysis and CAT Score Variable Selection
Description:

This package provides an efficient framework for high-dimensional linear and diagonal discriminant analysis with variable selection. The classifier is trained using James-Stein-type shrinkage estimators and predictor variables are ranked using correlation-adjusted t-scores (CAT scores). Variable selection error is controlled using false non-discovery rates or higher criticism.

r-statteacherassistant 0.0.3
Propagated dependencies: r-tidyr@1.3.1 r-stringr@1.6.0 r-stringi@1.8.7 r-sortable@0.6.0 r-shinyjs@2.1.0 r-shinybs@0.61.1 r-shinyalert@3.1.0 r-shiny@1.11.1 r-rmatio@0.19.0 r-rio@1.2.4 r-rhandsontable@0.3.8 r-plotly@4.11.0 r-ggplot2@4.0.1 r-extradistr@1.10.0 r-dt@0.34.0 r-dplyr@1.1.4 r-desctools@0.99.60
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/ccasement/StatTeacherAssistant
Licenses: Expat
Build system: r
Synopsis: An App that Assists Intro Statistics Instructors with Data Sets
Description:

Includes an interactive application designed to support educators in wide-ranging disciplines, with a particular focus on those teaching introductory statistical methods (descriptive and/or inferential) for data analysis. Users are able to randomly generate data, make new versions of existing data through common adjustments (e.g., add random normal noise and perform transformations), and check the suitability of the resulting data for statistical analyses.

r-symengine 0.2.10
Dependencies: mpfr@4.2.2 gmp@6.3.0 cmake@4.1.3
Propagated dependencies: r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/symengine/symengine.R
Licenses: GPL 2+
Build system: r
Synopsis: Interface to the 'SymEngine' Library
Description:

This package provides an R interface to SymEngine <https://github.com/symengine/>, a standalone C++ library for fast symbolic manipulation. The package has functionalities for symbolic computation like calculating exact mathematical expressions, solving systems of linear equations and code generation.

r-simpop 2.1.3
Propagated dependencies: r-xgboost@1.7.11.1 r-wrswor@1.2.0 r-vim@6.2.6 r-vcd@1.4-13 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-ranger@0.17.0 r-partykit@1.2-24 r-nnet@7.3-20 r-matrixstats@1.5.0 r-mass@7.3-65 r-lattice@0.22-7 r-foreach@1.5.2 r-fitdistrplus@1.2-4 r-envstats@3.1.0 r-e1071@1.7-16 r-doparallel@1.0.17 r-data-table@1.17.8 r-colorspace@2.1-2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/statistikat/simPop
Licenses: GPL 2+
Build system: r
Synopsis: Simulation of Complex Synthetic Data Information
Description:

This package provides tools and methods to simulate populations for surveys based on auxiliary data. The tools include model-based methods, calibration and combinatorial optimization algorithms, see Templ, Kowarik and Meindl (2017) <doi:10.18637/jss.v079.i10>) and Templ (2017) <doi:10.1007/978-3-319-50272-4>. The package was developed with support of the International Household Survey Network, DFID Trust Fund TF011722 and funds from the World bank.

r-superspreading 0.4.0
Propagated dependencies: r-rlang@1.1.6 r-checkmate@2.3.3
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/epiverse-trace/superspreading
Licenses: Expat
Build system: r
Synopsis: Understand Individual-Level Variation in Infectious Disease Transmission
Description:

Estimate and understand individual-level variation in transmission. Implements density and cumulative compound Poisson discrete distribution functions (Kremer et al. (2021) <doi:10.1038/s41598-021-93578-x>), as well as functions to calculate infectious disease outbreak statistics given epidemiological parameters on individual-level transmission; including the probability of an outbreak becoming an epidemic/extinct (Kucharski et al. (2020) <doi:10.1016/S1473-3099(20)30144-4>), or the cluster size statistics, e.g. what proportion of cases cause X\% of transmission (Lloyd-Smith et al. (2005) <doi:10.1038/nature04153>).

r-semantic-assets 1.1.0
Propagated dependencies: r-htmlwidgets@1.6.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/Appsilon/semantic.assets
Licenses: LGPL 3
Build system: r
Synopsis: Assets for 'shiny.semantic'
Description:

Style sheets and JavaScript assets for shiny.semantic package.

r-statespacer 0.5.0
Propagated dependencies: r-rdpack@2.6.4 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://DylanB95.github.io/statespacer/
Licenses: Expat
Build system: r
Synopsis: State Space Modelling in 'R'
Description:

This package provides a tool that makes estimating models in state space form a breeze. See "Time Series Analysis by State Space Methods" by Durbin and Koopman (2012, ISBN: 978-0-19-964117-8) for details about the algorithms implemented.

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