Marlin is a Java2D RenderingEngine optimized for performance (improved memory usage and footprint, better multi-threading) and better visual quality based on OpenJDK's pisces implementation. It handles shape rendering (Graphics2D draw(Shape) / fill(Shape) with stroke and dash attributes.

microbiomeDataSets is a collection of microbiome datasets loaded from Bioconductor'S ExperimentHub infrastructure. The datasets serve as reference for workflows and vignettes published adjacent to the microbiome analysis tools on Bioconductor. Additional datasets can be added overtime and additions from authors are welcome.

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

This is a common 64-bit build of U-Boot for all 64-bit capable Raspberry Pi variants.

This package only contains the file u-boot.bin.

Identification and visualization of groups of closely spaced mutations in the DNA sequence of cancer genome. The extremely mutated zones are searched in the symmetric dissimilarity matrix using the anti-Robinson matrix properties. Different data sets are obtained to describe and plot the clustered mutations information.

Modeling the zero coupon yield curve using the dynamic De Rezende and Ferreira (2011) <doi:10.1002/for.1256> five factor model with variable or fixed decaying parameters. For explanatory purposes, the package also includes various short datasets of interest rates for the BRICS countries.

Kendall random walks are a continuous-space Markov chains generated by the Kendall generalized convolution. This package provides tools for simulating these random walks and studying distributions related to them. For more information about Kendall random walks see Jasiulis-GoÅ dyn (2014) <arXiv:1412.0220>.

This package provides a suite of conversion functions to create internally standardized spatial polygons data frames. Utility functions use these data sets to return values such as country, state, time zone, watershed, etc. associated with a set of longitude/latitude pairs. (They also make cool maps.).

Rainbow-blocks is an Emacs mode that highlights blocks made of parentheses, brackets, and braces according to their depth. Each successive level is highlighted in a different color. This makes it easy to orient yourself in the code, and tell which statements are at a given level.

RSyntaxTextArea is a syntax highlighting, code folding text component for Java Swing. It extends JTextComponent so it integrates completely with the standard javax.swing.text package. It is fast and efficient, and can be used in any application that needs to edit or view source code.

This package provides functions to run and assist four different similarity measures. The similarity measures included are: longest common subsequence (LCSS), Frechet distance, edit distance and dynamic time warping (DTW). Each of these similarity measures can be calculated from two n-dimensional trajectories, both in matrix form.

Write modelling results into a database for tigreBrowser', a web-based tool for browsing figures and summary data of independent model fits, such as Gaussian process models fitted for each gene or other genomic element. The browser is available at <https://github.com/PROBIC/tigreBrowser>.

Simplicial-simplicial regression is performed via the simplicially constrained spatial median regression model. The regression coefficients are constrained to be non-negative and sum to 1. For the spatial median regression the iteratively reweighted least squares algorithm is adopted, where quadratic programming is used to impose the constraints.

When performing multiple imputations, while 5-10 imputations are sufficient for obtaining point estimates, a larger number of imputations are needed for proper standard error estimates. This package allows you to calculate how many imputations are needed, following the work of von Hippel (2020) <doi:10.1177/0049124117747303>.

This package provides classes and functions for metrics calculation as part of the EarthScope MUSTANG project. The functionality in this package builds upon the base classes of the IRISSeismic package. Metrics include basic statistics as well as higher level health metrics that can help identify problematic seismometers.

This package provides tools to perform interrupted-time series through a generalised least squares (GLS) framework on linear outcomes. Allows for multiple interventions and a control with ARMA (autoregressive and moving-average) correction. For more details see Lopez Bernal, Cummins, and Gasparrini (2017) <doi:10.1093/ije/dyw098>.

This unmaintained package provides a Prawn extension that allows including other Portable Document Format (PDF) documents as background or combining several PDF documents into one. This functionality used to be part of Prawn itself, but was extracted from Prawn 0.15.0 because of its many longstanding issues.

This package provides tools for calculating commerce metrics, pairing treatment and control results from A/B testing experiments, estimating incremental effects, and quantifying uncertainty with Student's t and nonparametric bootstrap confidence intervals. Includes validation helpers, a high-level analysis workflow, and compatibility functions for the original package interface.

Different measures which can be used to quantify similarities between regions. These measures are isonymy, isonymy between, Lasker distance, coefficients of Hedrick and Nei. In addition, it calculates biodiversity indices such as Margalef, Menhinick, Simpson, Shannon, Shannon-Wiener, Sheldon, Heip, Hill Numbers, Geometric Mean and Cressie and Read statistics.

The AffyRNADegradation package helps with the assessment and correction of RNA degradation effects in Affymetrix 3 expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.

Saikuro is a Ruby cyclomatic complexity analyzer. When given Ruby source code Saikuro will generate a report listing the cyclomatic complexity of each method found. In addition, Saikuro counts the number of lines per method and can generate a listing of the number of tokens on each line of code.

Spatially-resolved transcriptomics (SRT) and single-nucleus RNA-sequencing (snRNA-seq) data from the locus coeruleus (LC) in postmortem human brain samples. Data were generated with the 10x Genomics Visium SRT and 10x Genomics Chromium snRNA-seq platforms. Datasets are stored in SpatialExperiment and SingleCellExperiment formats.

Range Modeling Metadata Standards (RMMS) address three challenges: they (i) are designed for convenience to encourage use, (ii) accommodate a wide variety of applications, and (iii) are extensible to allow the community of range modelers to steer it as needed. RMMS are based on a data dictionary that specifies a hierarchical structure to catalog different aspects of the range modeling process. The dictionary balances a constrained, minimalist vocabulary to improve standardization with flexibility for users to provide their own values. Merow et al. (2019) <DOI:10.1111/geb.12993> describe the standards in more detail. Note that users who prefer to use the R package ecospat can obtain it from <https://github.com/ecospat/ecospat>.

The Regexp::Grammars module adds a small number of new regex constructs that can be used within Perl 5.10 patterns to implement complete recursive-descent parsing. It allows you to go beyond matching complex, nested and recursive structures, and allows you to parse and extract hierarchical data from it.

This is a library to allow the easy creation of Relay-compliant servers using the GraphQL Python reference implementation of a GraphQL server. It should be noted that the code is a exact port of the original graphql-relay js implementation from Facebook.