Graphical tools for visualizing high-dimensional data along a path of alternating one- and two-dimensional plots. Includes optional interactive graphics via loon (which uses tcltk from base R). Support is provided for constructing graph structures and, when available, plotting them with Bioconductor packages (e.g., graph', Rgraphviz'); these are optional and examples/vignettes are skipped if they are not installed. For algorithms and further details, see <doi:10.18637/jss.v095.i04>.

This package provides a structured framework for consistent user communication and configuration management for package developers.

Geneâ based association tests to model count data with excessive zeros and rare variants using zero-inflated Poisson/zero-inflated negative Binomial regression framework. This method was originally described by Fan, Sun, and Li in Genetic Epidemiology 46(1):73-86 <doi:10.1002/gepi.22438>.

Improve the usage of model fitting functions within a piped work flow.

Downloads environmental sensor data from the ZENTRA Cloud V5 API (<https://api.zentracloud.io>) into tidy data frames. Provides device discovery, reading retrieval with automatic pagination and rate-limit handling, tidy long output with a wide-format helper, and an incremental sync engine with pluggable local storage (RDS files, CSV files, or return-only) so that new readings can be fetched on a schedule and appended to a growing local record.

Fits Bayesian zero-inflated negative binomial regression models with Gaussian process random effects for spatial, temporal, or spatiotemporal count data. Provides Markov chain Monte Carlo sampling, configurable random effects in the zero-inflation and count components, and posterior predictive draws. Implements a full GP version of the methods described by He and Huang (2024) <doi:10.1016/j.jspi.2023.106098>.

This package implements the estimation of local (and global) association measures: Lewontin's D, Ducher's Z, pointwise mutual information, normalized pointwise mutual information and chi-squared residuals. The significance of local (and global) association is accessed using p-values estimated by permutations.

This package implements zero-modified versions of the Complex Tri-Parametric Pearson distribution for overdispersed count data. The package addresses limitations of existing implementations when the parameter b approaches zero. It provides distribution functions, maximum likelihood estimation, and diagnostic tools for modeling count data with excess zeros. The methodology is based on Rodriguez-Avi and coauthors (2003) <doi:10.1007/s00362-002-0134-7>.

This package contains the US Census Bureau's 2020 ZCTA to County Relationship File, as well as convenience functions to translate between States, Counties and ZIP Code Tabulation Areas (ZCTAs).

This package provides simple statistics from instruments and observations at sites in the NEON network, and acts as a simple interface for v0 of the National Ecological Observatory Network (NEON) API. Statistics are generated for meteorologic and soil-based observations, and are presented for daily, annual, and one-time observations at all available NEON sites. Users can also retrieve any dataset publicly hosted by NEON. Metadata for NEON sites and data products can be returned, as well as information on data product availability by site and date. For more information on NEON, please visit <https://www.neonscience.org>. For detailed data product information, please see the NEON data product catalog at <https://data.neonscience.org/data-product-catalog>.

Procedures for calculation, plotting, animation, and approximation of the outputs for fuzzy numbers (see A.I. Ban, L. Coroianu, P. Grzegorzewski "Fuzzy Numbers: Approximations, Ranking and Applications" (2015)) based on the Zadeh's Extension Principle (see de Barros, L.C., Bassanezi, R.C., Lodwick, W.A. (2017) <doi:10.1007/978-3-662-53324-6_2>).