This package implements the SVM-Maj algorithm to train data with support vector machine <doi:10.1007/s11634-008-0020-9>. This algorithm uses two efficient updates, one for linear kernel and one for the nonlinear kernel.

Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. (2019) <doi:10.1093/sysbio/syy057>.

Measure text's sentiment with dictionaries and simple rules covering negations and modifiers. User-supplied dictionaries are supported, including Unicode emojis and multi-word tokens, so this package can also be used to study constructs beyond sentiment.

Implement text and sentiment analysis with texter'. Generate sentiment scores on text data and also visualize sentiments. texter allows you to quickly generate insights on your data. It includes support for lexicons such as NRC and Bing'.

This package performs sparse discriminant analysis on a combination of node and leaf predictors when the predictor variables are structured according to a tree, as described in Fukuyama et al. (2017) <doi:10.1371/journal.pcbi.1005706>.

Retrieve data from the UNESCO Institute for Statistics (UIS) API <https://api.uis.unesco.org/api/public/documentation/>. UIS provides public access to more than 4,000 indicators focusing on education, science and technology, culture, and communication.

This package provides unified syntax to write data from lazy dplyr tbl or dplyr sql query or a dataframe to a database table with modes such as create, append, insert, update, upsert, patch, delete, overwrite, overwrite_schema.

Setting layout through YAML headers in R-Markdown documents, enabling their automatic generation. Functions and methods may summarize R objects in automatic reports, for instance check-lists and further reports applied to the packages taxlist and vegtable'.

Infer alternative splicing from paired-end RNA-seq data. The model is based on counting paths across exons, rather than pairwise exon connections, and estimates the fragment size and start distributions non-parametrically, which improves estimation precision.

This package provides `dplyr` verbs (`mutate`, `select`, `filter`, etc...) supporting `S4Vectors::DataFrame` objects. Importantly, this is achieved without conversion to an intermediate `tibble`. Adds grouping infrastructure to `DataFrame` which is respected by the transformation verbs.

Raw data downloaded from GEO for the compound LY294002. Raw data is from multiple platforms from Affymetrix and Illumina. This data is used to illustrate the cross-platform meta-analysis of microarray data using the crossmeta package.

The MADSEQ package provides a group of hierarchical Bayeisan models for the detection of mosaic aneuploidy, the inference of the type of aneuploidy and also for the quantification of the fraction of aneuploid cells in the sample.

Assorted utilities for multi-modal analyses of single-cell datasets. Includes functions to combine multiple modalities for downstream analysis, perform MNN-based batch correction across multiple modalities, and to compute correlations between assay values for different modalities.

Toolbox for larger-than-memory scientific computing and visualization, providing efficient out-of-core data structures using files or shared memory, for dense and sparse vectors, matrices, and arrays, with applications to nonuniformly sampled signals and images.

This package contains R functions to predict biological variables to from placnetal DNA methylation data generated from infinium arrays. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data.

SIGHTS is a suite of normalization methods, statistical tests, and diagnostic graphical tools for high throughput screening (HTS) assays. HTS assays use microtitre plates to screen large libraries of compounds for their biological, chemical, or biochemical activity.

This package provides a toolset for Geometric Morphometrics and mesh processing. This includes (among other stuff) mesh deformations based on reference points, permutation tests, detection of outliers, processing of sliding semi-landmarks and semi-automated surface landmark placement.

This package provides a more scalable alternative to Venn and Euler diagrams for visualizing intersecting sets. Create visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks.

This package provides an R wrapper of OpenAI API endpoints (see https://platform.openai.com/docs/introduction for details). This package covers Models, Completions, Chat, Edits, Images, Embeddings, Audio, Files, Fine-tunes, Moderations, and legacy Engines endpoints.

This is a package for maximum likelihood estimation of random utility discrete choice models. The software is described in Croissant (2020) <doi:10.18637/jss.v095.i11> and the underlying methods in Train (2009) <doi:10.1017/CBO9780511805271>.

This package provides tools to estimate parameters of accumulated damage (load duration) models based on failure time data under a Bayesian framework, using Approximate Bayesian Computation (ABC), and to assess long-term reliability under stochastic load profiles.

Supports calculations and visualization for renewable power systems and the environment. Analysis and graphical tools for DC and AC circuits and their use in electric power systems. Analysis and graphical tools for thermodynamic cycles and heat engines, supporting efficiency calculations in coal-fired power plants, gas-fired power plants. Calculations of carbon emissions and atmospheric CO2 dynamics. Analysis of power flow and demand for the grid, as well as power models for microgrids and off-grid systems. Provides resource and power generation for hydro power, wind power, and solar power.

An R implementation of the algorithms described in Reingold and Dershowitz (4th ed., Cambridge University Press, 2018) <doi:10.1017/9781107415058>, allowing conversion between many different calendar systems. Cultural and religious holidays from several calendars can be calculated.

Estimation of one- and two-sided confidence intervals via the numerical inversion of the cumulative distribution function of a statistic's sampling distribution. For more details, see section 9.2.3 of Casella and Berger (2002) <ISBN:0534243126>.