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r-qcapro 1.1-2
Propagated dependencies: r-lpsolve@5.6.23
Channel: guix-cran
Location: guix-cran/packages/q.scm (guix-cran packages q)
Home page: https://cran.r-project.org/package=QCApro
Licenses: GPL 3
Build system: r
Synopsis: Advanced Functionality for Performing and Evaluating Qualitative Comparative Analysis
Description:

This package provides advanced functionality for performing configurational comparative research with Qualitative Comparative Analysis (QCA), including crisp-set, multi-value, and fuzzy-set QCA. It also offers advanced tools for sensitivity diagnostics and methodological evaluations of QCA.

r-qrisk3 0.6.0
Channel: guix-cran
Location: guix-cran/packages/q.scm (guix-cran packages q)
Home page: https://cran.r-project.org/package=QRISK3
Licenses: GPL 3
Build system: r
Synopsis: 10-Year Cardiovascular Disease Risk Calculator (QRISK3 2017)
Description:

This function aims to calculate risk of developing cardiovascular disease of individual patients in next 10 years. This unofficial package was based on published open-sourced free risk prediction algorithm QRISK3-2017 <https://qrisk.org/src.php>.

r-simkid 1.0.0
Propagated dependencies: r-withr@3.0.2 r-tmvtnorm@1.7 r-tidyr@1.3.1 r-rlang@1.1.6 r-randomizr@1.0.0 r-msm@1.8.2 r-magrittr@2.0.4 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/Andy00000000000/SimKid
Licenses: GPL 3+
Build system: r
Synopsis: Simulate Virtual Pediatrics using Anthropometric Growth Charts
Description:

Simulate a virtual population of subjects that has demographic distributions (height, weight, and BMI) and correlations (height and weight), by sex and age, which mimic those reported in real-world anthropometric growth charts (CDC, WHO, or Fenton).

r-skfcpd 0.2.4
Propagated dependencies: r-rlang@1.1.6 r-reshape2@1.4.5 r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.0 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-fastgasp@0.6.2
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SKFCPD
Licenses: GPL 3+
Build system: r
Synopsis: Fast Online Changepoint Detection for Temporally Correlated Data
Description:

Sequential Kalman filter for scalable online changepoint detection by temporally correlated data. It enables fast single and multiple change points with missing values. See the reference: Hanmo Li, Yuedong Wang, Mengyang Gu (2023), <arXiv:2310.18611>.

r-svmmaj 0.2.9.4
Propagated dependencies: r-scales@1.4.0 r-reshape2@1.4.5 r-kernlab@0.9-33 r-gridextra@2.3 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SVMMaj
Licenses: GPL 2
Build system: r
Synopsis: Implementation of the SVM-Maj Algorithm
Description:

This package implements the SVM-Maj algorithm to train data with support vector machine <doi:10.1007/s11634-008-0020-9>. This algorithm uses two efficient updates, one for linear kernel and one for the nonlinear kernel.

r-secsse 3.5.0
Propagated dependencies: r-treestats@1.70.8 r-tibble@3.3.0 r-rlang@1.1.6 r-rcppparallel@5.1.11-1 r-rcpp@1.1.0 r-ggplot2@4.0.1 r-geiger@2.0.11 r-ddd@5.2.4 r-bh@1.87.0-1 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://rsetienne.github.io/secsse/
Licenses: GPL 3+ FSDG-compatible
Build system: r
Synopsis: Several Examined and Concealed States-Dependent Speciation and Extinction
Description:

Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. (2019) <doi:10.1093/sysbio/syy057>.

r-treeda 0.0.5
Propagated dependencies: r-sparselda@0.1-9 r-reshape2@1.4.5 r-phyloseq@1.54.0 r-mvtnorm@1.3-3 r-matrix@1.7-4 r-gtable@0.3.6 r-ggplot2@4.0.1 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/jfukuyama/treeda
Licenses: GPL 2
Build system: r
Synopsis: Tree-Based Discriminant Analysis
Description:

This package performs sparse discriminant analysis on a combination of node and leaf predictors when the predictor variables are structured according to a tree, as described in Fukuyama et al. (2017) <doi:10.1371/journal.pcbi.1005706>.

r-tardis 0.1.5
Propagated dependencies: r-tidyr@1.3.1 r-stringr@1.6.0 r-stringi@1.8.7 r-rlang@1.1.6 r-purrr@1.2.0 r-magrittr@2.0.4 r-dplyr@1.1.4 r-cpp11@0.5.2
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/chris31415926535/tardis
Licenses: Expat
Build system: r
Synopsis: Text Analysis with Rules and Dictionaries for Inferring Sentiment
Description:

Measure text's sentiment with dictionaries and simple rules covering negations and modifiers. User-supplied dictionaries are supported, including Unicode emojis and multi-word tokens, so this package can also be used to study constructs beyond sentiment.

r-texter 0.1.9
Propagated dependencies: r-tidytext@0.4.3 r-tidyr@1.3.1 r-textdata@0.4.5 r-stringr@1.6.0 r-stopwords@2.3 r-purrr@1.2.0 r-plyr@1.8.9 r-magrittr@2.0.4 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://github.com/simmieyungie/texter
Licenses: Expat
Build system: r
Synopsis: An Easy Text and Sentiment Analysis Library
Description:

Implement text and sentiment analysis with texter'. Generate sentiment scores on text data and also visualize sentiments. texter allows you to quickly generate insights on your data. It includes support for lexicons such as NRC and Bing'.

r-uisapi 0.1.1
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.3.0 r-rlang@1.1.6 r-jsonlite@2.0.0 r-httr2@1.2.1 r-dplyr@1.1.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/u.scm (guix-cran packages u)
Home page: https://github.com/tidy-intelligence/r-uisapi
Licenses: Expat
Build system: r
Synopsis: Access the UNESCO Institute for Statistics API
Description:

Retrieve data from the UNESCO Institute for Statistics (UIS) API <https://api.uis.unesco.org/api/public/documentation/>. UIS provides public access to more than 4,000 indicators focusing on education, science and technology, culture, and communication.

r-writer 0.1.0
Propagated dependencies: r-rlang@1.1.6 r-glue@1.8.0 r-dplyr@1.1.4 r-dbplyr@2.5.1 r-dbi@1.2.3 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/w.scm (guix-cran packages w)
Home page: https://github.com/talegari/writer
Licenses: LGPL 3+
Build system: r
Synopsis: Write from Multiple Sources to a Database Table
Description:

This package provides unified syntax to write data from lazy dplyr tbl or dplyr sql query or a dataframe to a database table with modes such as create, append, insert, update, upsert, patch, delete, overwrite, overwrite_schema.

r-yamlme 0.1.2
Propagated dependencies: r-yaml@2.3.10 r-rmarkdown@2.30
Channel: guix-cran
Location: guix-cran/packages/y.scm (guix-cran packages y)
Home page: https://github.com/kamapu/yamlme
Licenses: GPL 2+
Build system: r
Synopsis: Writing 'YAML' Headers for 'R-Markdown' Documents
Description:

Setting layout through YAML headers in R-Markdown documents, enabling their automatic generation. Functions and methods may summarize R objects in automatic reports, for instance check-lists and further reports applied to the packages taxlist and vegtable'.

r-renpow 0.1-1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://www.r-project.org/
Licenses: GPL 2+
Build system: r
Synopsis: Renewable Power Systems and the Environment
Description:

Supports calculations and visualization for renewable power systems and the environment. Analysis and graphical tools for DC and AC circuits and their use in electric power systems. Analysis and graphical tools for thermodynamic cycles and heat engines, supporting efficiency calculations in coal-fired power plants, gas-fired power plants. Calculations of carbon emissions and atmospheric CO2 dynamics. Analysis of power flow and demand for the grid, as well as power models for microgrids and off-grid systems. Provides resource and power generation for hydro power, wind power, and solar power.

r-accept 1.0.0
Propagated dependencies: r-dplyr@1.1.4 r-reldist@1.7-2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/accept/
Licenses: GPL 3
Build system: r
Synopsis: Acute COPD Exacerbation Prediction Tool (ACCEPT)
Description:

This package allows clinicians to predict the rate and severity of future acute exacerbation in Chronic Obstructive Pulmonary Disease (COPD) patients, based on the clinical prediction model published in Adibi et al. (2019) doi:10.1101/651901.

r-ncmeta 0.4.0
Propagated dependencies: r-cftime@1.7.2 r-dplyr@1.1.4 r-rlang@1.1.6 r-rnetcdf@2.11-1 r-tibble@3.3.0 r-tidyr@1.3.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/hypertidy/ncmeta
Licenses: GPL 3
Build system: r
Synopsis: Straightforward NetCDF metadata
Description:

Extract metadata from NetCDF data sources; these can be files, file handles or servers. This package leverages and extends the lower level functions of the RNetCDF package providing a consistent set of functions that all return data frames.

r-parcor 0.2-6
Propagated dependencies: r-epi@2.61 r-genenet@1.2.17 r-glmnet@4.1-10 r-mass@7.3-65 r-ppls@2.0.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/parcor
Licenses: GPL 2+
Build system: r
Synopsis: Regularized estimation of partial correlation matrices
Description:

This package estimates the matrix of partial correlations based on different regularized regression methods: lasso, adaptive lasso, PLS, and Ridge Regression. In addition, the package provides model selection for lasso, adaptive lasso and Ridge regression based on cross-validation.

r-pander 0.6.6
Propagated dependencies: r-digest@0.6.39 r-rcpp@1.1.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://rapporter.github.io/pander
Licenses: AGPL 3+
Build system: r
Synopsis: Render R objects into Pandoc's markdown
Description:

The main aim of the pander R package is to provide a minimal and easy tool for rendering R objects into Pandoc's markdown. The package is also capable of exporting/converting complex Pandoc documents (reports) in various ways.

r-cqrreg 1.2.1
Propagated dependencies: r-quantreg@6.1 r-rcpp@1.1.0 r-rcpparmadillo@15.2.2-1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=cqrReg
Licenses: GPL 2+
Build system: r
Synopsis: Quantile, composite quantile regression and regularized versions
Description:

Estimate quantile regression (QR) and composite quantile regression (cqr) and with adaptive lasso penalty using interior point (IP), majorize and minimize (MM), coordinate descent (CD), and alternating direction method of multipliers algorithms (ADMM).

r-fields 17.1
Propagated dependencies: r-maps@3.4.3 r-rcolorbrewer@1.1-3 r-spam@2.11-1 r-viridislite@0.4.2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://www.image.ucar.edu/fields
Licenses: GPL 2+
Build system: r
Synopsis: Tools for spatial data
Description:

This is a package for curve, surface and function fitting with an emphasis on splines, spatial data and spatial statistics. The major methods include cubic, and thin plate splines, Kriging, and compactly supported covariance functions for large data sets.

r-bandle 1.14.0
Propagated dependencies: r-tidyr@1.3.1 r-s4vectors@0.48.0 r-robustbase@0.99-6 r-rlang@1.1.6 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-rcolorbrewer@1.1-3 r-prolocdata@1.48.0 r-proloc@1.50.0 r-plyr@1.8.9 r-msnbase@2.36.0 r-lbfgs@1.2.1.2 r-knitr@1.50 r-gtools@3.9.5 r-gridextra@2.3 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-ggalluvial@0.12.5 r-dplyr@1.1.4 r-coda@0.19-4.1 r-circlize@0.4.16 r-biocstyle@2.38.0 r-biocparallel@1.44.0 r-biobase@2.70.0 r-bh@1.87.0-1
Channel: guix-bioc
Location: guix-bioc/packages/b.scm (guix-bioc packages b)
Home page: http://github.com/ococrook/bandle
Licenses: Artistic License 2.0
Build system: r
Synopsis: An R package for the Bayesian analysis of differential subcellular localisation experiments
Description:

The Bandle package enables the analysis and visualisation of differential localisation experiments using mass-spectrometry data. Experimental methods supported include dynamic LOPIT-DC, hyperLOPIT, Dynamic Organellar Maps, Dynamic PCP. It provides Bioconductor infrastructure to analyse these data.

r-genefu 2.42.0
Propagated dependencies: r-survcomp@1.60.0 r-mclust@6.1.2 r-limma@3.66.0 r-impute@1.84.0 r-ic10trainingdata@2.0.1 r-ic10@2.0.2 r-biomart@2.66.0 r-amap@0.8-20 r-aims@1.42.0
Channel: guix-bioc
Location: guix-bioc/packages/g.scm (guix-bioc packages g)
Home page: http://www.pmgenomics.ca/bhklab/software/genefu
Licenses: Artistic License 2.0
Build system: r
Synopsis: Computation of Gene Expression-Based Signatures in Breast Cancer
Description:

This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, and survival analysis.

r-isolde 1.38.0
Channel: guix-bioc
Location: guix-bioc/packages/i.scm (guix-bioc packages i)
Home page: www.r-project.org
Licenses: GPL 2+
Build system: r
Synopsis: Integrative Statistics of alleLe Dependent Expression
Description:

This package provides ISoLDE a new method for identifying imprinted genes. This method is dedicated to data arising from RNA sequencing technologies. The ISoLDE package implements original statistical methodology described in the publication below.

r-mygene 1.46.0
Propagated dependencies: r-txdbmaker@1.6.0 r-sqldf@0.4-11 r-s4vectors@0.48.0 r-plyr@1.8.9 r-jsonlite@2.0.0 r-httr@1.4.7 r-hmisc@5.2-4 r-genomicfeatures@1.62.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mygene
Licenses: Artistic License 2.0
Build system: r
Synopsis: Access MyGene.Info_ services
Description:

MyGene.Info_ provides simple-to-use REST web services to query/retrieve gene annotation data. It's designed with simplicity and performance emphasized. *mygene*, is an easy-to-use R wrapper to access MyGene.Info_ services.

r-miasim 1.16.0
Propagated dependencies: r-treesummarizedexperiment@2.18.0 r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-powerlaw@1.0.0 r-matrixgenerics@1.22.0 r-desolve@1.40
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/microbiome/miaSim
Licenses: Artistic License 2.0 FSDG-compatible
Build system: r
Synopsis: Microbiome Data Simulation
Description:

Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. Hubbell's Neutral model is used to determine the abundance matrix. The resulting abundance matrix is applied to (Tree)SummarizedExperiment objects.

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