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r-valentine 2025.2.14
Channel: guix-cran
Location: guix-cran/packages/v.scm (guix-cran packages v)
Home page: https://github.com/tadascience/valentine
Licenses: Expat
Build system: r
Synopsis: Spread the Love for R Packages with Poetry
Description:

Uses large language models to create poems about R packages. Currently contains the roses() function to make "roses are red, ..." style poems and the prompt() function to only assemble the prompt without submitting it to the model.

r-rselenium 1.7.9
Propagated dependencies: r-catools@1.18.3 r-httr@1.4.7 r-wdman@0.2.6
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://docs.ropensci.org/RSelenium/
Licenses: AGPL 3+
Build system: r
Synopsis: R bindings for Selenium WebDriver
Description:

This package provides a set of R bindings for the Selenium 2.0 WebDriver (see https://selenium.dev/documentation/en/ for more information) using the JsonWireProtocol (see https://github.com/SeleniumHQ/selenium/wiki/JsonWireProtocol for more information). Selenium 2.0 WebDriver allows driving a web browser natively as a user would either locally or on a remote machine using the Selenium server it marks a leap forward in terms of web browser automation. Selenium automates web browsers (commonly referred to as browsers). Using RSelenium you can automate browsers locally or remotely.

r-racmemeev 1.0.1
Propagated dependencies: r-snow@0.4-4 r-rstan@2.32.7 r-rjags@4-17 r-reshape2@1.4.5 r-patchwork@1.3.2 r-parallelly@1.45.1 r-mcmcpack@1.7-1 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-foreach@1.5.2 r-dplyr@1.1.4 r-dosnow@1.0.20 r-bayesplot@1.14.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/westford14/rACME-MEEV
Licenses: Expat
Build system: r
Synopsis: Multi-Variate Measurement Error Adjustment
Description:

This package provides a methodology to perform multivariate measurement error adjustment using external validation data. Allows users to remove the attenuating effect of measurement error by incorporating a distribution of external validation data, and allows for plotting of all resultant adjustments. Sensitivity analyses can also be run through this package to test how different ranges of validity coefficients can impact the effect of the measurement error adjustment. The methods implemented in this package are based on the work by Muoka, A., Agogo, G., Ngesa, O., Mwambi, H. (2020): <doi:10.12688/f1000research.27892.1>.

r-varhandle 2.0.6
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://codeberg.org/mehrad/varhandle
Licenses: GPL 2+
Build system: r
Synopsis: Functions for robust variable handling
Description:

This package contains some functions to help users (especially data explorers) to make more sense of their variables and take the most out of variables and hardware resources. Functions in this package are supposed to be efficient and easy to use.

emacs-racer 1.2-0.1e63e98
Propagated dependencies: emacs-dash@2.20.0 emacs-f@0.21.0 emacs-pos-tip@0.4.7 emacs-rust-mode@1.0.6 emacs-s@1.13.0
Channel: guix
Location: gnu/packages/emacs-xyz.scm (gnu packages emacs-xyz)
Home page: https://github.com/racer-rust/emacs-racer
Licenses: Expat
Build system: emacs
Synopsis: Racer support for Emacs
Description:

This is the official Emacs package for Racer. It supports code completion of variables, functions and modules. It can also jump to definition of functions and types, and show a help buffer based on the docstring of the thing at point.

ruby-x25519 1.0.10
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: https://github.com/RubyCrypto/x25519
Licenses: Modified BSD
Build system: ruby
Synopsis: Cryptography library for Ruby providing the X25519 Diffie-Hellman function
Description:

The x25519 gem is an efficient public key cryptography library for Ruby providing key exchange/agreement via the X25519 (as known as Curve25519) Elliptic Curve Diffie-Hellman function as described in RFC 7748.

r-diffcoexp 1.30.0
Propagated dependencies: r-wgcna@1.73 r-summarizedexperiment@1.40.0 r-psych@2.5.6 r-igraph@2.2.1 r-diffcorr@0.4.5 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/d.scm (guix-bioc packages d)
Home page: https://github.com/hidelab/diffcoexp
Licenses: FSDG-compatible
Build system: r
Synopsis: Differential Co-expression Analysis
Description:

This package provides a tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

r-mbamethyl 1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MBAmethyl
Licenses: Artistic License 2.0
Build system: r
Synopsis: Model-based analysis of DNA methylation data
Description:

This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.

r-netsmooth 1.30.0
Propagated dependencies: r-summarizedexperiment@1.40.0 r-singlecellexperiment@1.32.0 r-scater@1.38.0 r-matrix@1.7-4 r-hdf5array@1.38.0 r-entropy@1.3.2 r-delayedarray@0.36.0 r-data-table@1.17.8 r-clusterexperiment@2.30.0 r-cluster@2.1.8.1
Channel: guix-bioc
Location: guix-bioc/packages/n.scm (guix-bioc packages n)
Home page: https://github.com/BIMSBbioinfo/netSmooth
Licenses: GPL 3
Build system: r
Synopsis: Network smoothing for scRNAseq
Description:

netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.

r-annotater 0.2.4
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://github.com/luisDVA/annotater
Licenses: Expat
Build system: r
Synopsis: Annotate Package Load Calls
Description:

This package provides non-invasive annotation of package load calls such as \codelibrary(), \codep_load(), and \coderequire() so that we can have an idea of what the packages we are loading are meant for.

r-aeroevapr 0.1.6
Propagated dependencies: r-readxl@1.4.5 r-openxlsx@4.2.8.1 r-data-table@1.17.8
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://cran.r-project.org/package=AeroEvapR
Licenses: CC0
Build system: r
Synopsis: Estimating Reservoir Evaporation via Aerodynamic Approach
Description:

Developed as an R alternative to the AeroEvap model developed by the Desert Research Institute (DRI) in python <https://github.com/WSWUP/AeroEvap/blob/master/README.rst> which estimates open water evaporation using the aerodynamic mass transfer approach.

r-cvmaplfam 0.1.1
Propagated dependencies: r-quadprog@1.5-8 r-mgcv@1.9-4 r-mass@7.3-65 r-fda@6.3.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=cvmaPLFAM
Licenses: GPL 3+
Build system: r
Synopsis: Cross-Validation Model Averaging for Partial Linear Functional Additive Models
Description:

Produce an averaging estimate/prediction by combining all candidate models for partial linear functional additive models, using multi-fold cross-validation criterion. More details can be referred to arXiv e-Prints via <doi:10.48550/arXiv.2105.00966>.

r-copulareg 0.1.0
Propagated dependencies: r-rvinecopulib@0.7.3.1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=copulareg
Licenses: FSDG-compatible
Build system: r
Synopsis: Copula Regression
Description:

Fits multivariate models in an R-vine pair copula construction framework, in such a way that the conditional copula can be easily evaluated. In addition, the package implements functionality to compute or approximate the conditional expectation via the conditional copula.

r-cthresher 1.1.0
Propagated dependencies: r-matrix@1.7-4
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://arxiv.org/abs/1611.02609
Licenses: GPL 2+
Build system: r
Synopsis: Continuous Threshold Expectile Regression
Description:

Estimation and inference methods for the continuous threshold expectile regression. It can fit the continuous threshold expectile regression and test the existence of change point, for the paper, "Feipeng Zhang and Qunhua Li (2016). A continuous threshold expectile regression, submitted.".

r-decorater 0.1.2
Propagated dependencies: r-rwekajars@3.9.3-2 r-rweka@0.4-48 r-rjava@1.0-11
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=DecorateR
Licenses: GPL 2+
Build system: r
Synopsis: Fit and Deploy DECORATE Trees
Description:

DECORATE (Diverse Ensemble Creation by Oppositional Relabeling of Artificial Training Examples) builds an ensemble of J48 trees by recursively adding artificial samples of the training data ("Melville, P., & Mooney, R. J. (2005) <DOI:10.1016/j.inffus.2004.04.001>").

r-docorator 0.6.0
Propagated dependencies: r-withr@3.0.2 r-tidyr@1.3.1 r-stringr@1.6.0 r-stringi@1.8.7 r-rstudioapi@0.17.1 r-rmarkdown@2.30 r-rlang@1.1.6 r-quarto@1.5.1 r-purrr@1.2.0 r-png@0.1-8 r-lifecycle@1.0.4 r-knitr@1.50 r-gt@1.3.0 r-dplyr@1.1.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://GSK-Biostatistics.github.io/docorator/
Licenses: ASL 2.0
Build system: r
Synopsis: Docorate (Decorate + Output) Displays
Description:

This package provides a framework for creating production outputs. Users can frame a table, listing, or figure with headers and footers and save to an output file. Stores an intermediate docorator object for reproducibility and rendering to multiple output types.

r-detrender 1.0.5
Propagated dependencies: r-tkrplotr@0.1.7 r-dplr@1.7.8
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://cran.r-project.org/package=detrendeR
Licenses: GPL 2+
Build system: r
Synopsis: Graphical User Interface (GUI) to Visualize and Analyze Dendrochronological Data
Description:

This package provides a Graphical User Interface (GUI) to import, save, detrend and perform standard tree-ring analyses. The interactive detrending allows the user to check how well the detrending curve fits each time-series and change it when needed.

r-ecocopula 1.0.6
Propagated dependencies: r-tweedie@2.3.5 r-sna@2.8 r-plyr@1.8.9 r-ordinal@2023.12-4.1 r-mvabund@4.2.1 r-mgcv@1.9-4 r-mass@7.3-65 r-igraph@2.2.1 r-glm2@1.2.1 r-glasso@1.11 r-foreach@1.5.2 r-doparallel@1.0.17 r-betareg@3.2-4
Channel: guix-cran
Location: guix-cran/packages/e.scm (guix-cran packages e)
Home page: https://eco-stats.github.io/ecoCopula/
Licenses: LGPL 2.1+
Build system: r
Synopsis: Graphical Modelling and Ordination using Copulas
Description:

This package creates graphs of species associations (interactions) and ordination biplots from co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in Popovic, GC., Hui, FKC., Warton, DI., (2018) <doi:10.1016/j.jmva.2017.12.002>.

r-fastutils 0.2.1
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://github.com/Qile0317/FastUtils
Licenses: Expat
Build system: r
Synopsis: Fast, Readable Utility Functions
Description:

This package provides a wide variety of tools for general data analysis, wrangling, spelling, statistics, visualizations, package development, and more. All functions have vectorized implementations whenever possible. Exported names are designed to be readable, with longer names possessing short aliases.

r-fresa-cad 3.4.8
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://cran.r-project.org/package=FRESA.CAD
Licenses: LGPL 2.0+
Build system: r
Synopsis: Feature Selection Algorithms for Computer Aided Diagnosis
Description:

This package contains a set of utilities for building and testing statistical models (linear, logistic,ordinal or COX) for Computer Aided Diagnosis/Prognosis applications. Utilities include data adjustment, univariate analysis, model building, model-validation, longitudinal analysis, reporting and visualization.

r-fasttextr 2.1.1
Propagated dependencies: r-slam@0.1-55 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://github.com/EmilHvitfeldt/fastTextR
Licenses: Modified BSD
Build system: r
Synopsis: An Interface to the 'fastText' Library
Description:

An interface to the fastText library <https://github.com/facebookresearch/fastText>. The package can be used for text classification and to learn word vectors. An example how to use fastTextR can be found in the README file.

r-formshare 1.0.1
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://github.com/qlands/formshare-R-package
Licenses: GPL 3
Build system: r
Synopsis: Simple Connection Between the 'FormShare App' and 'R' for Advanced Analytics
Description:

This package provides analytics directly from R'. It requires: FormShare App': <https://github.com/qlands/FormShare >= 2.22.0> . Analytics plugin: <https://github.com/qlands/formshare_analytics_plugin> . Remote SQL plugin: <https://github.com/qlands/formshare_sql_plugin> .

r-freegroup 1.2-0
Propagated dependencies: r-plyr@1.8.9 r-magrittr@2.0.4 r-magic@1.6-1 r-freealg@1.1-8
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://github.com/RobinHankin/freegroup
Licenses: GPL 2
Build system: r
Synopsis: The Free Group
Description:

The free group in R; juxtaposition is represented by a plus. Includes inversion, multiplication by a scalar, group-theoretic power operation, and Tietze forms. To cite the package in publications please use Hankin (2022) <doi:10.48550/ARXIV.2212.05883>.

r-gamlss-tr 5.1-9
Propagated dependencies: r-gamlss-dist@6.1-1 r-gamlss@5.5-0
Channel: guix-cran
Location: guix-cran/packages/g.scm (guix-cran packages g)
Home page: https://www.gamlss.com/
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Generating and Fitting Truncated `gamlss.family' Distributions
Description:

This is an add on package to GAMLSS. The purpose of this package is to allow users to defined truncated distributions in GAMLSS models. The main function gen.trun() generates truncated version of an existing GAMLSS family distribution.

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