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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-mirna10cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mirna10cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mirna10cdf
Description:

This package provides a package containing an environment representing the miRNA-1_0.CDF file.

r-mogene10sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene10sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster)
Description:

Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster) assembled using data from public repositories.

r-moe430bcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/moe430bcdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: moe430bcdf
Description:

This package provides a package containing an environment representing the MOE430B.CDF file.

r-miaviz 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/microbiome/miaViz
Licenses: Artistic License 2.0 FSDG-compatible
Build system: r
Synopsis: Microbiome Analysis Plotting and Visualization
Description:

The miaViz package implements functions to visualize TreeSummarizedExperiment objects especially in the context of microbiome analysis. Part of the mia family of R/Bioconductor packages.

r-mgsa 1.58.0
Propagated dependencies: r-gplots@3.2.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/sba1/mgsa-bioc
Licenses: Artistic License 2.0
Build system: r
Synopsis: Model-based gene set analysis
Description:

Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.

r-metadict 1.0.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/BoYuan07/MetaDICT
Licenses: Artistic License 2.0
Build system: r
Synopsis: Microbiome data integration method via shared dictionary learning
Description:

MetaDICT is a method for the integration of microbiome data. This method is designed to remove batch effects and preserve biological variation while integrating heterogeneous datasets. MetaDICT can better avoid overcorrection when unobserved confounding variables are present.

r-mbcb 1.64.0
Propagated dependencies: r-tcltk2@1.6.1 r-preprocesscore@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://qbrc.swmed.edu/
Licenses: FSDG-compatible
Build system: r
Synopsis: MBCB (Model-based Background Correction for Beadarray)
Description:

This package provides a model-based background correction method, which incorporates the negative control beads to pre-process Illumina BeadArray data.

r-mgu74bv2probe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74bv2probe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type mgu74bv2
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was MG-U74Bv2\_probe\_tab.

r-mouse4302-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mouse4302.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)
Description:

Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302) assembled using data from public repositories.

r-multihiccompare 1.28.0
Propagated dependencies: r-qqman@0.1.9 r-pheatmap@1.0.13 r-pbapply@1.7-4 r-hiccompare@1.32.0 r-genomicranges@1.62.0 r-genomeinfodbdata@1.2.15 r-genomeinfodb@1.46.0 r-edger@4.8.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-biocparallel@1.44.0 r-aggregation@1.0.1
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/dozmorovlab/multiHiCcompare
Licenses: Expat
Build system: r
Synopsis: Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available
Description:

multiHiCcompare provides functions for joint normalization and difference detection in multiple Hi-C datasets. This extension of the original HiCcompare package now allows for Hi-C experiments with more than 2 groups and multiple samples per group. multiHiCcompare operates on processed Hi-C data in the form of sparse upper triangular matrices. It accepts four column (chromosome, region1, region2, IF) tab-separated text files storing chromatin interaction matrices. multiHiCcompare provides cyclic loess and fast loess (fastlo) methods adapted to jointly normalizing Hi-C data. Additionally, it provides a general linear model (GLM) framework adapting the edgeR package to detect differences in Hi-C data in a distance dependent manner.

r-matchbox 1.52.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/matchBox
Licenses: Artistic License 2.0
Build system: r
Synopsis: Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis
Description:

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

r-macorrplot 1.80.0
Propagated dependencies: r-lattice@0.22-7
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=15799785
Licenses: GPL 2+
Build system: r
Synopsis: Visualize artificial correlation in microarray data
Description:

Graphically displays correlation in microarray data that is due to insufficient normalization.

r-mu11ksubacdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu11ksubacdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mu11ksubacdf
Description:

This package provides a package containing an environment representing the Mu11KsubA.CDF file.

r-mirintegrator 1.40.0
Propagated dependencies: r-rontotools@2.38.0 r-rgraphviz@2.54.0 r-org-hs-eg-db@3.22.0 r-graph@1.88.0 r-ggplot2@4.0.1 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: http://datad.github.io/mirIntegrator/
Licenses: GPL 3+
Build system: r
Synopsis: Integrating microRNA expression into signaling pathways for pathway analysis
Description:

This package provides tools for augmenting signaling pathways to perform pathway analysis of microRNA and mRNA expression levels.

r-mirsponger 2.14.1
Propagated dependencies: r-survival@3.8-3 r-sponge@1.32.0 r-reactomepa@1.54.0 r-rcpp@1.1.0 r-rcolorbrewer@1.1-3 r-org-hs-eg-db@3.22.0 r-mcl@1.0 r-igraph@2.2.1 r-foreach@1.5.2 r-dose@4.4.0 r-doparallel@1.0.17 r-corpcor@1.6.10 r-clusterprofiler@4.18.2
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: <https://github.com/zhangjunpeng411/miRspongeR>
Licenses: GPL 3
Build system: r
Synopsis: Identification and analysis of miRNA sponge regulation
Description:

This package provides several functions to explore miRNA sponge (also called ceRNA or miRNA decoy) regulation from putative miRNA-target interactions or/and transcriptomics data (including bulk, single-cell and spatial gene expression data). It provides eight popular methods for identifying miRNA sponge interactions, and an integrative method to integrate miRNA sponge interactions from different methods, as well as the functions to validate miRNA sponge interactions, and infer miRNA sponge modules, conduct enrichment analysis of miRNA sponge modules, and conduct survival analysis of miRNA sponge modules. By using a sample control variable strategy, it provides a function to infer sample-specific miRNA sponge interactions. In terms of sample-specific miRNA sponge interactions, it implements three similarity methods to construct sample-sample correlation network.

r-methimpute 1.32.0
Propagated dependencies: r-reshape2@1.4.5 r-rcpp@1.1.0 r-minpack-lm@1.2-4 r-iranges@2.44.0 r-ggplot2@4.0.1 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-data-table@1.17.8 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/methimpute
Licenses: Artistic License 2.0
Build system: r
Synopsis: Imputation-guided re-construction of complete methylomes from WGBS data
Description:

This package implements functions for calling methylation for all cytosines in the genome.

r-mergeomics 1.38.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/Mergeomics
Licenses: GPL 2+
Build system: r
Synopsis: Integrative network analysis of omics data
Description:

The Mergeomics pipeline serves as a flexible framework for integrating multidimensional omics-disease associations, functional genomics, canonical pathways and gene-gene interaction networks to generate mechanistic hypotheses. It includes two main parts, 1) Marker set enrichment analysis (MSEA); 2) Weighted Key Driver Analysis (wKDA).

r-mogene20sttranscriptcluster-db 8.8.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mogene20sttranscriptcluster.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix mogene20 annotation data (chip mogene20sttranscriptcluster)
Description:

Affymetrix mogene20 annotation data (chip mogene20sttranscriptcluster) assembled using data from public repositories.

r-malaria-db0 3.22.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/malaria.db0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Base Level Annotation databases for malaria
Description:

Base annotation databases for malaria, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

r-moe430b-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/moe430b.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix MOE430B Array annotation data (chip moe430b)
Description:

Affymetrix Affymetrix MOE430B Array annotation data (chip moe430b) assembled using data from public repositories.

r-mgu74av2cdf 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mgu74av2cdf
Licenses: LGPL 2.0+
Build system: r
Synopsis: mgu74av2cdf
Description:

This package provides a package containing an environment representing the MG_U74Av2.CDF file.

r-metaphor 1.12.0
Propagated dependencies: r-stringr@1.6.0 r-recordlinkage@0.4-12.6 r-rcy3@2.30.0 r-pheatmap@1.0.13 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-clusterprofiler@4.18.2
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/MetaPhOR
Licenses: Artistic License 2.0
Build system: r
Synopsis: Metabolic Pathway Analysis of RNA
Description:

MetaPhOR was developed to enable users to assess metabolic dysregulation using transcriptomic-level data (RNA-sequencing and Microarray data) and produce publication-quality figures. A list of differentially expressed genes (DEGs), which includes fold change and p value, from DESeq2 or limma, can be used as input, with sample size for MetaPhOR, and will produce a data frame of scores for each KEGG pathway. These scores represent the magnitude and direction of transcriptional change within the pathway, along with estimated p-values.MetaPhOR then uses these scores to visualize metabolic profiles within and between samples through a variety of mechanisms, including: bubble plots, heatmaps, and pathway models.

r-mu11ksubb-db 3.13.0
Propagated dependencies: r-org-mm-eg-db@3.22.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://bioconductor.org/packages/mu11ksubb.db
Licenses: Artistic License 2.0
Build system: r
Synopsis: Affymetrix Affymetrix Mu11KsubB Array annotation data (chip mu11ksubb)
Description:

Affymetrix Affymetrix Mu11KsubB Array annotation data (chip mu11ksubb) assembled using data from public repositories.

r-meat 1.22.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/sarah-voisin/MEAT
Licenses: Expat
Build system: r
Synopsis: Muscle Epigenetic Age Test
Description:

This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).

Total results: 2911