This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\_tropicalis\_probe\_tab.

The Xeva package provides efficient and powerful functions for patient-drived xenograft (PDX) based pharmacogenomic data analysis. This package contains a set of functions to perform analysis of patient-derived xenograft data. This package was developed by the BHKLab, for further information please see our documentation.

Cross-hybridisation study on the ATH1 Affymetrix GeneChip.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Xenopus\_laevis\_probe\_tab.

xCell2 provides methods for cell type enrichment analysis using cell type signatures. It includes three main functions - 1. xCell2Train for training custom references objects from bulk or single-cell RNA-seq datasets. 2. xCell2Analysis for conducting the cell type enrichment analysis using the custom reference. 3. xCell2GetLineage for identifying dependencies between different cell types using ontology.

Multi-level model for cross-study detection of differential gene expression.

Base annotation databases for xenopus, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 30, 2015, and contain SNPs mapped to reference genome GRCh38.p2 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh38 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).

Define a relatively light class for managing Xenium data using Bioconductor. Address use of parquet for coordinates, SpatialExperiment for assay and sample data. Address serialization and use of cloud storage.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was X\_laevis\_2\_probe\_tab.

Affymetrix Xenopus laevis annotation data (chip xlaevis) assembled using data from public repositories.

This package provides a package containing an environment representing the X_tropicalis.cdf file.

This package provides data to use with xcore package.

This package provides a selection of RNA-Seq data from a yeast transcriptome experiment.

The yeast genome data was retrieved from the sequence read archive, aligned with bwa, and converted to BAM format with samtools.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was YG-S98\_probe\_tab.

This package provides a package containing an environment representing the Ye6100subA.CDF file.

This package provides a package containing an environment representing the Yeast_2.cdf file.

ExpressionSet for Spellman et al. (1998) yeast cell cycle microarray experiment.

This package provides a package containing an environment representing the Ye6100subB.CDF file.

Affymetrix Affymetrix Yeast_2 Array annotation data (chip yeast2) assembled using data from public repositories.

This package was created by frmaTools version 1.19.3 and hgu133ahsentrezgcdf version 19.0.0.

Base annotation databases for yeast, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

This package provides a package containing an environment representing the YG_S98.cdf file.