_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


composyx 1.5.0
Dependencies: blaspp@2025.05.28 lapackpp@2025.05.28 openblas@0.3.30 pastix@6.4.0 mumps-openmpi@5.8.0 arpack-ng@3.9.1 paddle@0.3.8 fabulous@1.1.4 chameleon@1.4.0 starpu@1.4.12
Propagated dependencies: hwloc@2.12.2 openmpi@4.1.6
Channel: guix-science
Location: guix-science/packages/algebra.scm (guix-science packages algebra)
Home page: https://gitlab.inria.fr/composyx/composyx.git
Licenses: CeCILL-C
Build system: cmake
Synopsis: Composable numerical solver
Description:

Composyx is a linear algebra C++ library focused on composability. Its purpose is to allow the user to express a large pannel of algorithms using a high-level interface to range from laptop prototypes to many node supercomputer parallel computations.

nfft 3.5.4-0.fc279af
Propagated dependencies: fftw@3.3.10
Channel: guix-science
Location: guix-science/packages/algebra.scm (guix-science packages algebra)
Home page: https://www-user.tu-chemnitz.de/~potts/nfft/
Licenses: GPL 2+
Build system: gnu
Synopsis: Computing the nonequispaced fast Fourier transform
Description:

NFFT is a software library, written in C, for computing non-equispaced fast Fourier transforms and related variations. It finds its application in fields such as medical imaging, summation schemes, polar FFT, discrete Radon transform or ridgelet transform.

chameleon 1.4.0
Dependencies: openblas@0.3.30 starpu@1.4.12 openmpi@4.1.6
Channel: guix-science
Location: guix-science/packages/algebra.scm (guix-science packages algebra)
Home page: https://gitlab.inria.fr/solverstack/chameleon
Licenses: CeCILL-C
Build system: cmake
Synopsis: Dense linear algebra solver
Description:

Chameleon is a dense linear algebra solver relying on sequential task-based algorithms where sub-tasks of the overall algorithms are submitted to a run-time system. Such a system is a layer between the application and the hardware which handles the scheduling and the effective execution of tasks on the processing units. A run-time system such as StarPU is able to manage automatically data transfers between not shared memory area (CPUs-GPUs, distributed nodes).

pastix 6.4.0
Dependencies: gfortran@14.3.0 hwloc@2.12.2 starpu@1.4.12 scotch@7.0.7 openblas@0.3.30 openmpi@4.1.6 python@3.11.14 python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/algebra.scm (guix-science packages algebra)
Home page: https://gitlab.inria.fr/solverstack/pastix
Licenses: CeCILL
Build system: cmake
Synopsis: Sparse matrix direct solver
Description:

PaStiX (Parallel Sparse matriX package) is a scientific library that provides a high performance parallel solver for very large sparse linear systems based on direct methods. Numerical algorithms are implemented in single or double precision (real or complex) using LLt, LDLt and LU with static pivoting (for non symmetric matrices having a symmetric pattern). This solver also provides some low-rank compression methods to reduce the memory footprint and/or the time-to-solution.

ginkgo-hpc 1.11.0
Dependencies: nlohmann-json@3.12.0 yaml-cpp@0.8.0-0.2f86d13
Channel: guix-science
Location: guix-science/packages/algebra.scm (guix-science packages algebra)
Home page: https://ginkgo-project.github.io/
Licenses: FreeBSD
Build system: cmake
Synopsis: Numerical linear algebra software package
Description:

Ginkgo is a high-performance numerical linear algebra library for many-core systems, with a focus on solution of sparse linear systems.

nfftf 3.5.4-0.fc279af
Propagated dependencies: fftwf@3.3.10
Channel: guix-science
Location: guix-science/packages/algebra.scm (guix-science packages algebra)
Home page: https://www-user.tu-chemnitz.de/~potts/nfft/
Licenses: GPL 2+
Build system: gnu
Synopsis: Computing the nonequispaced fast Fourier transform (single precision)
Description:

NFFT is a software library, written in C, for computing non-equispaced fast Fourier transforms and related variations. It finds its application in fields such as medical imaging, summation schemes, polar FFT, discrete Radon transform or ridgelet transform.

blaze 3.8.2
Dependencies: openblas@0.3.30
Channel: guix-science
Location: guix-science/packages/algebra.scm (guix-science packages algebra)
Home page: https://bitbucket.org/blaze-lib/blaze
Licenses: Modified BSD
Build system: cmake
Synopsis: High performance C++ math library
Description:

Blaze is an open-source, high-performance C++ math library for dense and sparse arithmetic. With its state-of-the-art Smart Expression Template implementation Blaze combines the elegance and ease of use of a domain-specific language with HPC-grade performance, making it one of the most intuitive and fastest C++ math libraries available.

The Blaze library offers:

  • high performance through the integration of BLAS libraries and manually tuned HPC math kernels;

  • vectorization by SSE, SSE2, SSE3, SSSE3, SSE4, AVX, AVX2, AVX-512, FMA, SVML, SLEEF, and XSIMD;

  • parallel execution by OpenMP, HPX, C++11 threads and Boost threads;

  • an intuitive and easy to use API of a domain specific language;

  • unified arithmetic with dense and sparse vectors and matrices;

  • thoroughly tested matrix and vector arithmetic;

  • completely portable, high quality C++ source code.

python-pyfftw 0.15.1
Dependencies: fftw@3.3.10 fftwf@3.3.10
Propagated dependencies: python-numpy@1.26.4
Channel: guix-science
Location: guix-science/packages/algebra.scm (guix-science packages algebra)
Home page: https://github.com/pyFFTW/pyFFTW
Licenses: Modified BSD
Build system: pyproject
Synopsis: Python wrapper for the FFTW library
Description:

This package provides a Pythonic wrapper around FFTW, the FFT library, presenting a unified interface for all the supported transforms.

python-pylops 2.6.0
Propagated dependencies: python-numpy@1.26.4 python-scipy@1.12.0
Channel: guix-science
Location: guix-science/packages/algebra.scm (guix-science packages algebra)
Home page: https://pylops.readthedocs.io/
Licenses: LGPL 3+
Build system: pyproject
Synopsis: Linear-operator library for Python
Description:

PyLops is an open-source Python library focused on providing a backend-agnostic, idiomatic, matrix-free library of linear operators and related computations. It is inspired by the iconic MATLAB Spot – A Linear-Operator Toolbox project.

paddle 0.3.8
Propagated dependencies: openmpi@4.1.6 pt-scotch@7.0.7
Channel: guix-science
Location: guix-science/packages/algebra.scm (guix-science packages algebra)
Home page: https://gitlab.inria.fr/solverstack/paddle
Licenses: CeCILL-C
Build system: cmake
Synopsis: Parallel Algebraic Domain Decomposition for Linear systEms
Description:

This software’s goal is to propose a parallel algebraic strategy to decompose a sparse linear system Ax=b, enabling its resolution by a domain decomposition solver. Up to now, Paddle is implemented for the MaPHyS linear solver.

bazel 6.3.2
Dependencies: openjdk@11.0.22 grpc@1.52.2 python@3.11.14 java-commons-collections@3.2.2 java-commons-compress@1.21 java-commons-io@2.5 java-commons-lang@2.6 java-hamcrest-core@1.3 java-jsr305@3.0.1 java-xz@1.9 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/bazel.scm (guix-science packages bazel)
Home page: https://bazel.build
Licenses: ASL 2.0
Build system: gnu
Synopsis: Build and test tool
Description:

Bazel is a build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bazel 6.5.0
Dependencies: openjdk@11.0.22 grpc@1.52.2 python@3.11.14 java-commons-collections@3.2.2 java-commons-compress@1.21 java-commons-io@2.5 java-commons-lang@2.6 java-hamcrest-core@1.3 java-jsr305@3.0.1 java-xz@1.9 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/bazel.scm (guix-science packages bazel)
Home page: https://bazel.build
Licenses: ASL 2.0
Build system: gnu
Synopsis: Build and test tool
Description:

Bazel is a build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bazel 6.4.0
Dependencies: openjdk@11.0.22 grpc@1.52.2 python@3.11.14 java-commons-collections@3.2.2 java-commons-compress@1.21 java-commons-io@2.5 java-commons-lang@2.6 java-hamcrest-core@1.3 java-jsr305@3.0.1 java-xz@1.9 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/bazel.scm (guix-science packages bazel)
Home page: https://bazel.build
Licenses: ASL 2.0
Build system: gnu
Synopsis: Build and test tool
Description:

Bazel is a build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

bazel 6.1.0
Dependencies: openjdk@11.0.22 grpc@1.52.2 python@3.11.14 java-commons-collections@3.2.2 java-commons-compress@1.21 java-commons-io@2.5 java-commons-lang@2.6 java-hamcrest-core@1.3 java-jsr305@3.0.1 java-xz@1.9 zlib@1.3.1
Channel: guix-science
Location: guix-science/packages/bazel.scm (guix-science packages bazel)
Home page: https://bazel.build
Licenses: ASL 2.0
Build system: gnu
Synopsis: Build and test tool
Description:

Bazel is a build and test tool similar to Make, Maven, and Gradle. It uses a human-readable, high-level build language. Bazel supports projects in multiple languages and builds outputs for multiple platforms. Bazel supports large codebases across multiple repositories, and large numbers of users.

netlib-hpl 2.3
Dependencies: openblas@0.3.30 openmpi@4.1.6
Channel: guix-science
Location: guix-science/packages/benchmark.scm (guix-science packages benchmark)
Home page: https://netlib.org/benchmark/hpl/
Licenses: non-copyleft
Build system: gnu
Synopsis: High-Performance Linpack Benchmark for Distributed-Memory Computers
Description:

HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.

npb-openmpi 3.4.3
Dependencies: openmpi@4.1.6
Channel: guix-science
Location: guix-science/packages/benchmark.scm (guix-science packages benchmark)
Home page: https://www.nas.nasa.gov/software/npb.html
Licenses: Expat
Build system: gnu
Synopsis: NAS Parallel Benchmarks (NPB), MPI variant
Description:

The benchmarks are derived from computational fluid dynamics (CFD) applications and consist of five kernels and three pseudo-applications in the original "pencil-and-paper" specification (NPB 1). The benchmark suite has been extended to include new benchmarks for unstructured adaptive meshes, parallel I/O, multi-zone applications, and computational grids. Problem sizes in NPB are predefined and indicated as different classes.

mpigraph 1-1.5f6cbd9
Dependencies: perl@5.36.0
Channel: guix-science
Location: guix-science/packages/benchmark.scm (guix-science packages benchmark)
Home page: https://github.com/LLNL/mpiGraph
Licenses: FSF-free
Build system: gnu
Synopsis: Benchmark to generate network bandwidth images
Description:

mpiGraph is a MPI benchmark to generate network bandwidth images.

npb-openmp 3.4.3
Channel: guix-science
Location: guix-science/packages/benchmark.scm (guix-science packages benchmark)
Home page: https://www.nas.nasa.gov/software/npb.html
Licenses: Expat
Build system: gnu
Synopsis: NAS Parallel Benchmarks (NPB), OpenMP variant
Description:

The benchmarks are derived from computational fluid dynamics (CFD) applications and consist of five kernels and three pseudo-applications in the original "pencil-and-paper" specification (NPB 1). The benchmark suite has been extended to include new benchmarks for unstructured adaptive meshes, parallel I/O, multi-zone applications, and computational grids. Problem sizes in NPB are predefined and indicated as different classes.

gpcnet 1.3
Dependencies: openmpi@4.1.6
Channel: guix-science
Location: guix-science/packages/benchmark.scm (guix-science packages benchmark)
Home page: https://github.com/netbench/GPCNET
Licenses: ASL 2.0
Build system: gnu
Synopsis: Global Performance and Congestion Network Test
Description:

GPCNeT is a benchmark suite that includes simulated network congestion, allowing the benchmarking of network performance in closer-to-real-conditions in HPC networks.

r-rbioformats 1.6.0
Dependencies: openjdk@11.0.22
Propagated dependencies: r-ebimage@4.52.0 r-rjava@1.0-11 r-s4vectors@0.48.0
Channel: guix-science
Location: guix-science/packages/bioconductor.scm (guix-science packages bioconductor)
Home page: https://github.com/aoles/RBioFormats
Licenses: GPL 3
Build system: r
Synopsis: R interface to Bio-Formats
Description:

This is an R package which interfaces with the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.

r-isee 2.14.0
Propagated dependencies: r-biocgenerics@0.56.0 r-circlize@0.4.16 r-colourpicker@1.3.0 r-complexheatmap@2.26.0 r-dt@0.34.0 r-ggplot2@4.0.1 r-ggrepel@0.9.6 r-igraph@2.2.1 r-mgcv@1.9-4 r-rintrojs@0.3.4 r-s4vectors@0.48.0 r-shiny@1.11.1 r-shinyace@0.4.4 r-shinydashboard@0.7.3 r-shinyjs@2.1.0 r-shinywidgets@0.8.6 r-singlecellexperiment@1.32.0 r-summarizedexperiment@1.40.0 r-vipor@0.4.7 r-viridislite@0.4.2
Channel: guix-science
Location: guix-science/packages/bioconductor.scm (guix-science packages bioconductor)
Home page: https://github.com/iSEE/iSEE
Licenses: Expat
Build system: r
Synopsis: Interactive SummarizedExperiment explorer
Description:

Create an interactive Shiny-based graphical user interface for exploring data stored in SummarizedExperiment objects, including row- and column-level metadata. The interface supports transmission of selections between plots and tables, code tracking, interactive tours, interactive or programmatic initialization, preservation of app state, and extensibility to new panel types via S4 classes. Special attention is given to single-cell data in a SingleCellExperiment object with visualization of dimensionality reduction results.

assembly-stats 1.0.1
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://github.com/sanger-pathogens
Licenses: GPL 3
Build system: cmake
Synopsis: Tool to extract assembly statistics from FASTA and FASTQ files
Description:

This package provides a tool to extract assembly statistics from FASTA and FASTQ files.

cgp-cavemanwrapper 1.16.0
Propagated dependencies: perl-file-path@2.16 perl-file-which@1.23 perl-const-fast@0.014 perl-capture-tiny@0.48 perl-ipc-system-simple@1.26 perl-try-tiny@0.31 perl-carp@1.50 perl-forks@0.36 pcap-core@3.5.0 perl@5.36.0
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://github.com/cancerit/cgpCaVEManWrapper
Licenses: AGPL 3+
Build system: gnu
Synopsis: Reference implementation of CGP workflow for CaVEMan
Description:

This package provides the reference implementation of CGP workflow for CaVEMan SNV analysis.

python-anvio 8
Propagated dependencies: python-bottle@0.13.4 python-colored@2.3.0 python-django@5.2.8 python-ete3@3.1.3 python-illumina-utils@2.13 python-matplotlib@3.8.2 python-mistune@3.1.3 python-multiprocess@0.70.18 python-networkx@3.4.2 python-numba@0.61.0 python-numpy@1.26.4 python-pandas@2.2.3 python-paste@3.10.1 python-plotext@5.2.8 python-psutil@7.0.0 python-pyani@0.2.12 python-pysam@0.23.0 python-requests@2.32.5 python-rich-argparse@1.7.1 python-scikit-learn@1.7.0 python-scipy@1.12.0 python-six@1.17.0 python-statsmodels@0.14.4 python-tabulate@0.9.0 snakemake@8.29.2
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://anvio.org
Licenses: GPL 3+
Build system: pyproject
Synopsis: Analysis and visualization platform for 'omics data
Description:

Anvi’o is a comprehensive platform that brings together many aspects of today’s computational strategies of data-enabled microbiology, including genomics, metagenomics, metatranscriptomics, pangenomics, metapangenomics, phylogenomics, and microbial population genetics in an integrated and easy-to-use fashion through extensive interactive visualization capabilities.

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Total results: 69112