This package implements tools for the analysis of partially ordered data, with a particular focus on the evaluation of multidimensional systems of indicators and on the analysis of poverty. References, Fattore M. (2016) <doi:10.1007/s11205-015-1059-6> Fattore M., Arcagni A. (2016) <doi:10.1007/s11205-016-1501-4> Arcagni A. (2017) <doi:10.1007/978-3-319-45421-4_19>.

Using the R package reticulate', this package creates an interface to the pysd toolset. The package provides an R interface to a number of pysd functions, and can read files in Vensim mdl format, and xmile format. The resulting simulations are returned as a tibble', and from that the results can be processed using dplyr and ggplot2'. The package has been tested using python3'.

This package provides a grammar of graphics framework built on base graphics. It provides a bbplot object and a + operator to incrementally compose plots from data, aesthetic mappings and layers, then render them using the base plotting system. The package includes common geometric layers (points, lines, segments, bars, histograms, boxplots and tiles), scales for color and other aesthetics, legends, faceting, themes, and significance annotations.

This package provides a method for prediction of environmental conditions based on transcriptome data linked with the environmental gradients. This package provides functions to overview gene-environment relationships, to construct the prediction model, and to predict environmental conditions where the transcriptomes were generated. This package can quest for candidate genes for the model construction even in non-model organisms transcriptomes without any genetic information.

Set of functions to quantify and map the behaviour of winds generated by tropical storms and cyclones in space and time. It includes functions to compute and analyze fields such as the maximum sustained wind field, power dissipation index and duration of exposure to winds above a given threshold. It also includes functions to map the trajectories as well as characteristics of the storms.

Spatial stratified heterogeneity (SSH) denotes the coexistence of within-strata homogeneity and between-strata heterogeneity. Information consistency-based methods provide a rigorous approach to quantify SSH and evaluate its role in spatial processes, grounded in principles of geographical stratification and information theory (Bai, H. et al. (2023) <doi:10.1080/24694452.2023.2223700>; Wang, J. et al. (2024) <doi:10.1080/24694452.2023.2289982>).

Shortest paths between points in grids. Optional barriers and custom transition functions. Applications regarding planet Earth, as well as generally spheres and planes. Optimized for computational performance, customizability, and user friendliness. Graph-theoretical implementation tailored to gridded data. Currently focused on Dijkstra's (1959) <doi:10.1007/BF01386390> algorithm. Future updates broaden the scope to other least cost path algorithms and to centrality measures.

This package provides functions to manipulate PDF files: fill out PDF forms; merge multiple PDF files into one; remove selected pages from a file; rename multiple files in a directory; rotate entire pdf document; rotate selected pages of a pdf file; Select pages from a file; splits single input PDF document into individual pages; splits single input PDF document into parts from given points.

This package provides a utility for working with women's basketball data. A scraping and aggregating interface for the WNBA Stats API <https://stats.wnba.com/> and ESPN's <https://www.espn.com> women's college basketball and WNBA statistics. It provides users with the capability to access the game play-by-plays, box scores, standings and results to analyze the data for themselves.

This package implements the bootstrap slope heterogeneity test for panel data based on Blomquist and Westerlund (2015) <doi:10.1007/s00181-015-0978-z>. Tests the null hypothesis that slope coefficients are homogeneous across cross-sectional units. Provides both standard and adjusted Delta statistics with bootstrap p-values. Supports partialling out of control variables and cross-sectional averages for dealing with cross-sectional dependence.

This package lets you carry out network-based gene set analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data. It implements methods described in Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>.

The encoding of color can be handled in many different ways, using different color spaces. As different color spaces have different uses, efficient conversion between these representations are important. This package provides a set of functions that gives access to very fast color space conversion and comparisons implemented in C++, and offers 100-fold speed improvements over the convertColor function in the grDevices package.

Radicale is a CalDAV and CardDAV server for UNIX-like platforms. Calendars and address books are available for both local and remote access, possibly limited through authentication policies. They can be viewed and edited by calendar and contact clients on mobile phones or computers.

Radicale intentionally does not fully comply with the CalDAV and CardDAV RFCs. Instead, it supports the CalDAV and CardDAV implementations of popular clients.

Reprepro is a tool to manage a repository of Debian packages (.deb, .udeb, .dsc, ...). It stores files either being injected manually or downloaded from some other repository (partially) mirrored into one pool/ hierarchy. Managed packages and files are stored in a Berkeley DB, so no database server is needed. Checking signatures of mirrored repositories and creating signatures of the generated Package indices is supported.

The xvfb-run wrapper simplifies running commands and scripts within a virtual X server environment. It sets up an X authority file or uses an existing user-specified one, writes a cookie to it, and then starts the Xvfb X server as a background process. It also takes care of killing the server and cleaning up before returning the exit status of the command.

The xvfb-run wrapper simplifies running commands and scripts within a virtual X server environment. It sets up an X authority file or uses an existing user-specified one, writes a cookie to it, and then starts the Xvfb X server as a background process. It also takes care of killing the server and cleaning up before returning the exit status of the command.

The functions in this package inspect, read, edit and run files for APSIM "Next Generation" ('JSON') and APSIM "Classic" ('XML'). The files with an apsim extension correspond to APSIM Classic (7.x) - Windows only - and the ones with an apsimx extension correspond to APSIM "Next Generation". For more information about APSIM see (<https://www.apsim.info/>) and for APSIM next generation (<https://apsimnextgeneration.netlify.app/>).

To address the violation of the assumption of normally distributed variables, researchers frequently employ bootstrapping. Building upon established packages for R (Sigmann et al. (2024) <doi:10.32614/CRAN.package.afex>, Lenth (2024) <doi:10.32614/CRAN.package.emmeans>), we provide bootstrapping functions to approximate a normal distribution of the parameter estimates for between-subject, within-subject, and mixed one-way and two-way ANOVA.

Epidemiological population dynamics models traditionally define a pathogen's virulence as the increase in the per capita rate of mortality of infected hosts due to infection. This package provides functions allowing virulence to be estimated by maximum likelihood techniques. The approach is based on the analysis of relative survival comparing survival in matching cohorts of infected vs. uninfected hosts (Agnew 2019) <doi:10.1101/530709>.

An implementation of intervention effect estimation for DAGs (directed acyclic graphs) learned from binary or continuous data. First, parameters are estimated or sampled for the DAG and then interventions on each node (variable) are propagated through the network (do-calculus). Both exact computation (for continuous data or for binary data up to around 20 variables) and Monte Carlo schemes (for larger binary networks) are implemented.

Income tax calculations for England, Northern Ireland and Wales. Estimate annual income tax within the different taxation bands at specified levels of both taxable income and the Personal Allowance, emulating the results obtained at <https://www.gov.uk/estimate-income-tax>. Calculate the standard Personal Allowance at various levels of taxable income. Estimate the personal allowance required to recoup a specified amount of income tax.

The method aims to identify important factors in screening experiments by aggregation over random models as studied in Singh and Stufken (2022) <doi:10.48550/arXiv.2205.13497>. This package provides functions to run the Gauss-Dantzig selector on screening experiments when interactions may be affecting the response. Currently, all functions require each factor to be at two levels coded as +1 and -1.

Fits unimodal and multimodal gambin distributions to species-abundance distributions from ecological data, as in in Matthews et al. (2014) <DOI:10.1111/ecog.00861>. gambin is short for gamma-binomial'. The main function is fit_abundances(), which estimates the alpha parameter(s) of the gambin distribution using maximum likelihood. Functions are also provided to generate the gambin distribution and for calculating likelihood statistics.

An implementation of the modelling and reporting features described in reference textbook and guidelines (Briggs, Andrew, et al. Decision Modelling for Health Economic Evaluation. Oxford Univ. Press, 2011; Siebert, U. et al. State-Transition Modeling. Medical Decision Making 32, 690-700 (2012).): deterministic and probabilistic sensitivity analysis, heterogeneity analysis, time dependency on state-time and model-time (semi-Markov and non-homogeneous Markov models), etc.