Colour palettes for data, based on some well known public data sets. Includes helper functions to map absolute values to known palettes, and capture the work of image colour mapping as raster data sets.

An iterative feature selection method (manuscript submitted) that internally utilizes various Machine Learning methods that have embedded feature reduction in order to shrink down the feature space into a small and yet robust set.

This package provides a Text mining toolkit for Chinese, which includes facilities for Chinese string processing, Chinese NLP supporting, encoding detecting and converting. Moreover, it provides some functions to support tm package in Chinese.

This package provides a shiny based interactive exploration framework for analyzing clinical trials data. teal currently provides a dynamic filtering facility and different data viewers. teal shiny applications are built using standard shiny modules.

Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.

This package provides a Common Lisp library for fetching and parsing RSS feeds data via HTTP. Currently, it supports RSS versions 0.90, 0.91, and 0.92 as well as RSS version 2.

This package implements standard and reference based multiple imputation methods for continuous longitudinal endpoints (Gower-Page et al. (2022) <doi:10.21105/joss.04251>). In particular, this package supports deterministic conditional mean imputation and jackknifing as described in Wolbers et al. (2022) <doi:10.1002/pst.2234>, Bayesian multiple imputation as described in Carpenter et al. (2013) <doi:10.1080/10543406.2013.834911>, and bootstrapped maximum likelihood imputation as described in von Hippel and Bartlett (2021) <doi: 10.1214/20-STS793>.

This package implements TRACDS (Temporal Relationships between Clusters for Data Streams), a generalization of Extensible Markov Model (EMM). TRACDS adds a temporal or order model to data stream clustering by superimposing a dynamically adapting Markov Chain. Also provides an implementation of EMM (TRACDS on top of tNN data stream clustering). Development of this package was supported in part by NSF IIS-0948893 and R21HG005912 from the National Human Genome Research Institute. Hahsler and Dunham (2010) <doi:10.18637/jss.v035.i05>.

ENA (Shaffer, D. W. (2017) Quantitative Ethnography. ISBN: 0578191687) is a method used to identify meaningful and quantifiable patterns in discourse or reasoning. ENA moves beyond the traditional frequency-based assessments by examining the structure of the co-occurrence, or connections in coded data. Moreover, compared to other methodological approaches, ENA has the novelty of (1) modeling whole networks of connections and (2) affording both quantitative and qualitative comparisons between different network models. Shaffer, D.W., Collier, W., & Ruis, A.R. (2016).

Read and write las and laz binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing <https://www.asprs.org/divisions-committees/lidar-division/laser-las-file-format-exchange-activities>. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.4 <https://laszip.org/>.

Argument parsing for R scripts, with support for long and short Unix-style options including option clustering, positional arguments including those of variable length, and multiple usage patterns which may take different subsets of options.

Bayesian Additive Regression Trees (BART) provide flexible nonparametric modeling of covariates for continuous, binary, categorical and time-to-event outcomes. For more information see Sparapani, Spanbauer and McCulloch <doi:10.18637/jss.v097.i01>.

Calculation of various common and less common comfort indices such as predicted mean vote or the two node model. Converts physical variables such as relative to absolute humidity and evaluates the performance of comfort indices.

Uses monotonically constrained Cubic Bezier Splines (CBS) to approximate latent utility functions in intertemporal choice and risky choice data. For more information, see Lee, Glaze, Bradlow, and Kable <doi:10.1007/s11336-020-09723-4>.

This package provides functions for identifying, fitting, and applying continuous-time stochastic models to phylogenetic data. The package is based on methods introduced in Noonan et al. (2021) <doi:10.1101/2021.05.21.445056>.

This package creates interactive genome browser. It joins the data analysis power of R and the visualization libraries of JavaScript in one package. Barrios, D. & Prieto, C. (2017) <doi:10.1089/cmb.2016.0213>.

First using dada2 R tools to analyse metabarcode data, the DBTC package then uses the BLAST algorithm to search unknown sequences against local databases, and then takes reduced matched results and provides best taxonomic assignments.

Tool for Environment-Wide Association Studies (EnvWAS / EWAS) which are repeated analysis. It includes three functions. One function for linear regression, a second for logistic regression and a last one for generalized linear models.

This package provides functions for estimating a generalized partial linear model, a semiparametric variant of the generalized linear model (GLM) which replaces the linear predictor by the sum of a linear and a nonparametric function.

Fits generalized linear models using the same model specification as glm in the stats package, but with a modified default fitting method that provides greater stability for models that may fail to converge using glm.

Many useful functions and extensions for dealing with meteorological data in the tidy data framework. Extends ggplot2 for better plotting of scalar and vector fields and provides commonly used analysis methods in the atmospheric sciences.

This package provides a system for organizing column names in data. Aimed at supporting a prefix-based and suffix-based column naming scheme. Extends dplyr functionality to add ordering by function and more explicit renaming.

This package provides a wrapper for the OpenTripPlanner <http://www.opentripplanner.org/> REST API. Queries are submitted to the relevant OpenTripPlanner API resource, the response is parsed and useful R objects are returned.

Generates a position balanced or nearly position balanced block design with given parameters. This package can also convert a given proper and equireplicate block design into a position balanced or nearly position balanced block design.