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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-openholidaysr 0.1.0
Propagated dependencies: r-httr2@1.2.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/jfeldhege/openholidaysR
Licenses: Expat
Build system: r
Synopsis: Provides Access to the 'OpenHolidays' API
Description:

This package provides dates for public and school holidays for a number of countries and their subdivisions through the OpenHolidays API at <https://www.openholidaysapi.org/en/>.

r-otrecod 0.1.2
Propagated dependencies: r-vcd@1.4-13 r-statmatch@1.4.3 r-roi-plugin-glpk@1.0-0 r-roi@1.0-1 r-rdist@0.0.5 r-proxy@0.4-27 r-plyr@1.8.9 r-party@1.3-18 r-ompr-roi@1.0.2 r-ompr@1.0.4 r-missmda@1.21 r-mice@3.18.0 r-factominer@2.12 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OTrecod
Licenses: GPL 3
Build system: r
Synopsis: Data Fusion using Optimal Transportation Theory
Description:

In the context of data fusion, the package provides a set of functions dedicated to the solving of recoding problems using optimal transportation theory (Gares, Guernec, Savy (2019) <doi:10.1515/ijb-2018-0106> and Gares, Omer (2020) <doi:10.1080/01621459.2020.1775615>). From two databases with no overlapping part except a subset of shared variables, the functions of the package assist users until obtaining a unique synthetic database, where the missing information is fully completed.

r-obfuscator 0.2.2
Propagated dependencies: r-tibble@3.3.0 r-stringr@1.6.0 r-rfast@2.1.5.2 r-readr@2.1.6 r-matrixstats@1.5.0 r-crayon@1.5.3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://obfuscator.edsandorf.me
Licenses: GPL 3
Build system: r
Synopsis: Obfuscation Game Designs
Description:

When people make decisions, they may do so using a wide variety of decision rules. The package allows users to easily create obfuscation games to test the obfuscation hypothesis. It provides an easy to use interface and multiple options designed to vary the difficulty of the game and tailor it to the user's needs. For more detail: Chorus et al., 2021, Obfuscation maximization-based decision-making: Theory, methodology and first empirical evidence, Mathematical Social Sciences, 109, 28-44, <doi:10.1016/j.mathsocsci.2020.10.002>.

r-odbc-resourcer 1.0.0
Propagated dependencies: r-resourcer@1.5.0 r-r6@2.6.1 r-odbc@1.6.4.1 r-httr@1.4.7 r-dbi@1.2.3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=odbc.resourcer
Licenses: LGPL 2.1+
Build system: r
Synopsis: Open Database Connectivity Resource Resolver
Description:

This package provides a database resource that is accessible through the Open Database Connectivity ('ODBC') API. This package uses the Resource model, with URL "resolver" and "client", to dynamically discover and make accessible tables stored in a MS SQL Server database. For more details see Marcon (2021) <doi:10.1371/journal.pcbi.1008880>.

r-outlying 0.0.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=outlying
Licenses: Expat
Build system: r
Synopsis: Outliers Detection
Description:

This package provides functions for detecting outliers in datasets using statistical methods. The package supports identification of anomalous observations in numerical data and is intended for use in data cleaning, exploratory data analysis, and preprocessing workflows.

r-opthedging 1.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: http://www.r-project.org
Licenses: GPL 2+
Build system: r
Synopsis: Estimation of value and hedging strategy of call and put options
Description:

Estimation of value and hedging strategy of call and put options, based on optimal hedging and Monte Carlo method, from Chapter 3 of Statistical Methods for Financial Engineering', by Bruno Remillard, CRC Press, (2013).

r-orionz-g 1.0.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=ORIONZ.G
Licenses: GPL 3
Build system: r
Synopsis: EAP Scoring in Exploratory FA Solutions with Correlated Residuals
Description:

Obtaining Bayes Expected A Posteriori (EAP) individual score estimates based on linear and non-linear extended Exploratoy Factor Analysis solutions that include a correlated-residual structure.

r-opdoe 1.0-10
Propagated dependencies: r-polynom@1.4-1 r-orthopolynom@1.0-6.1 r-nlme@3.1-168 r-mvtnorm@1.3-3 r-gmp@0.7-5 r-crossdes@1.1-2
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OPDOE
Licenses: GPL 2+
Build system: r
Synopsis: Optimal Design of Experiments
Description:

Several function related to Experimental Design are implemented here, see "Optimal Experimental Design with R" by Rasch D. et. al (ISBN 9781439816974).

r-oro-dicom 0.5.3
Propagated dependencies: r-oro-nifti@0.11.4
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: http://rig.oro.us.com
Licenses: Modified BSD
Build system: r
Synopsis: Rigorous - DICOM Input / Output
Description:

Data input/output functions for data that conform to the Digital Imaging and Communications in Medicine (DICOM) standard, part of the Rigorous Analytics bundle.

r-octopucs 0.1.1
Propagated dependencies: r-vegan@2.7-2 r-stringr@1.6.0 r-progress@1.2.3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=octopucs
Licenses: GPL 3
Build system: r
Synopsis: Statistical Support for Hierarchical Clusters
Description:

Generates n hierarchical clustering hypotheses on subsets of classifiers (usually species in community ecology studies). The n clustering hypotheses are combined to generate a generalized cluster, and computes three metrics of support. 1) The average proportion of elements conforming the group in each of the n clusters (integrity). And 2) the contamination, i.e., the average proportion of elements from other groups that enter a focal group. 3) The probability of existence of the group gives the integrity and contamination in a Bayesian approach.

r-orthgs 0.1.8
Propagated dependencies: r-treetools@2.1.0 r-seqinr@4.2-36 r-phytools@2.5-2 r-phangorn@2.12.1 r-igraph@2.2.1 r-castor@1.8.4 r-bio3d@2.4-5 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=orthGS
Licenses: GPL 2+
Build system: r
Synopsis: Orthology vs Paralogy Relationships among Glutamine Synthetase from Plants
Description:

This package provides tools to analyze and infer orthology and paralogy relationships between glutamine synthetase proteins in seed plants.

r-overshiny 0.2.0
Propagated dependencies: r-stringr@1.6.0 r-shinyjs@2.1.0 r-shinyjqui@0.4.1 r-shiny@1.11.1 r-htmltools@0.5.8.1 r-ggplot2@4.0.1 r-cowplot@1.2.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/nicholasdavies/overshiny
Licenses: Expat
Build system: r
Synopsis: Interactive Overlays on 'shiny' Plots
Description:

This package provides rectangular elements that can be dragged and resized over plots in shiny apps. This may be useful in applications where users need to mark regions on the plot for further input or processing.

r-omicsprepr 0.1.1
Propagated dependencies: r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/ikemillar/OmicsPrepR
Licenses: GPL 3
Build system: r
Synopsis: Unified Preprocessing Toolkit for Proteomics and Metabolomics
Description:

This package provides unified workflows for quality control, normalization, and visualization of proteomic and metabolomic data. The package simplifies preprocessing through automated imputation, scaling, and principal component analysis (PCA)-based exploratory analysis, enabling researchers to prepare omics datasets efficiently for downstream statistical and machine learning analyses.

r-onlinecov 1.3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=onlineCOV
Licenses: GPL 2+
Build system: r
Synopsis: Online Change Point Detection in High-Dimensional Covariance Structure
Description:

Implement a new stopping rule to detect anomaly in the covariance structure of high-dimensional online data. The detection procedure can be applied to Gaussian or non-Gaussian data with a large number of components. Moreover, it allows both spatial and temporal dependence in data. The dependence can be estimated by a data-driven procedure. The level of threshold in the stopping rule can be determined at a pre-selected average run length. More detail can be seen in Li, L. and Li, J. (2020) "Online Change-Point Detection in High-Dimensional Covariance Structure with Application to Dynamic Networks." <arXiv:1911.07762>.

r-opt5pl 0.1.1
Propagated dependencies: r-rcpp@1.1.0 r-matrixcalc@1.0-6
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=Opt5PL
Licenses: GPL 2
Build system: r
Synopsis: Optimal Designs for the 5-Parameter Logistic Model
Description:

Obtain and evaluate various optimal designs for the 3, 4, and 5-parameter logistic models. The optimal designs are obtained based on the numerical algorithm in Hyun, Wong, Yang (2018) <doi:10.18637/jss.v083.i05>.

r-optm 0.1.9
Propagated dependencies: r-sizer@0.1-8
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OptM
Licenses: GPL 2+
Build system: r
Synopsis: Estimating the Optimal Number of Migration Edges from 'Treemix'
Description:

The popular population genetic software Treemix by Pickrell and Pritchard (2012) <DOI:10.1371/journal.pgen.1002967> estimates the number of migration edges on a population tree. However, it can be difficult to determine the number of migration edges to include. Previously, it was customary to stop adding migration edges when 99.8% of variation in the data was explained, but OptM automates this process using an ad hoc statistic based on the second-order rate of change in the log likelihood. OptM also has added functionality for various threshold modeling to compare with the ad hoc statistic.

r-otclust 1.0.6
Propagated dependencies: r-rcpp@1.1.0 r-rcolorbrewer@1.1-3 r-magrittr@2.0.4 r-ggplot2@4.0.1 r-class@7.3-23
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OTclust
Licenses: GPL 2+
Build system: r
Synopsis: Mean Partition, Uncertainty Assessment, Cluster Validation and Visualization Selection for Cluster Analysis
Description:

Providing mean partition for ensemble clustering by optimal transport alignment(OTA), uncertainty measures for both partition-wise and cluster-wise assessment and multiple visualization functions to show uncertainty, for instance, membership heat map and plot of covering point set. A partition refers to an overall clustering result. Jia Li, Beomseok Seo, and Lin Lin (2019) <doi:10.1002/sam.11418>. Lixiang Zhang, Lin Lin, and Jia Li (2020) <doi:10.1093/bioinformatics/btaa165>.

r-ohoegdm 0.1.1
Propagated dependencies: r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/tmsalab/ohoegdm
Licenses: GPL 2+
Build system: r
Synopsis: Ordinal Higher-Order Exploratory General Diagnostic Model for Polytomous Data
Description:

Perform a Bayesian estimation of the ordinal exploratory Higher-order General Diagnostic Model (OHOEGDM) for Polytomous Data described by Culpepper, S. A. and Balamuta, J. J. (2021) <doi:10.1080/00273171.2021.1985949>.

r-orgutils 0.5-3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://enricoschumann.net/R/packages/orgutils/
Licenses: GPL 2+
Build system: r
Synopsis: Helper Functions for Org Files
Description:

Helper functions for Org files (<https://orgmode.org/>): a generic function toOrg for transforming R objects into Org markup (most useful for data frames; there are also methods for Dates/POSIXt) and a function to read Org tables into data frames.

r-otrselect 1.3
Propagated dependencies: r-survival@3.8-3 r-lars@1.3
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OTRselect
Licenses: GPL 2
Build system: r
Synopsis: Variable Selection for Optimal Treatment Decision
Description:

This package provides a penalized regression framework that can simultaneously estimate the optimal treatment strategy and identify important variables. Appropriate for either censored or uncensored continuous response.

r-omicflow 1.5.1
Propagated dependencies: r-yyjsonr@0.1.21 r-vegan@2.7-2 r-rstatix@0.7.3 r-rhdf5@2.54.0 r-rcppparallel@5.1.11-1 r-rcpparmadillo@15.2.2-1 r-rcpp@1.1.0 r-rcolorbrewer@1.1-3 r-r6@2.6.1 r-patchwork@1.3.2 r-matrix@1.7-4 r-magrittr@2.0.4 r-jsonvalidate@1.5.0 r-jsonlite@2.0.0 r-ggrepel@0.9.6 r-ggpubr@0.6.2 r-ggplot2@4.0.1 r-data-table@1.17.8 r-cli@3.6.5 r-ape@5.8-1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/agusinac/OmicFlow
Licenses: Expat
Build system: r
Synopsis: Fast and Efficient (Automated) Analysis of Sparse Omics Data
Description:

This package provides a generalised data structure for fast and efficient loading and data munching of sparse omics data. The OmicFlow requires an up-front validated metadata template from the user, which serves as a guide to connect all the pieces together by aligning them into a single object that is defined as an omics class. Once this unified structure is established, users can perform manual subsetting, visualisation, and statistical analysis, or leverage the automated autoFlow method to generate a comprehensive report.

r-obaspatial 1.9
Propagated dependencies: r-truncdist@1.0-2 r-mvtnorm@1.3-3 r-modeest@2.4.0 r-laplacesdemon@16.1.6 r-invgamma@1.2 r-hdinterval@0.2.4 r-cubature@2.1.4-1
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://cran.r-project.org/package=OBASpatial
Licenses: GPL 2+
Build system: r
Synopsis: Objective Bayesian Analysis for Spatial Regression Models
Description:

It makes an objective Bayesian analysis of the spatial regression model using both the normal (NSR) and student-T (TSR) distributions. The functions provided give prior and posterior objective densities and allow default Bayesian estimation of the model regression parameters. Details can be found in Ordonez et al. (2020) <arXiv:2004.04341>.

r-openrepgrid-ic 0.6.2
Propagated dependencies: r-withr@3.0.2 r-tidyverse@2.0.0 r-tidyr@1.3.1 r-stringr@1.6.0 r-shinywidgets@0.9.0 r-shinythemes@1.2.0 r-shinyjs@2.1.0 r-shinyfeedback@0.4.0 r-shinydashboardplus@2.0.6 r-shinydashboard@0.7.3 r-shinycssloaders@1.1.0 r-shinybs@0.61.1 r-shiny@1.11.1 r-scales@1.4.0 r-rintrojs@0.3.4 r-reshape2@1.4.5 r-rcolorbrewer@1.1-3 r-openxlsx@4.2.8.1 r-magrittr@2.0.4 r-igraph@2.2.1 r-formattable@0.2.1 r-dt@0.34.0 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/markheckmann/OpenRepGrid.ic
Licenses: Expat
Build system: r
Synopsis: Interpretive Clustering for Repertory Grids
Description:

Shiny UI to identify cliques of related constructs in repertory grid data. See Burr, King, & Heckmann (2020) <doi:10.1080/14780887.2020.1794088> for a description of the interpretive clustering (IC) method.

r-ocrrbbr 0.1.0
Propagated dependencies: r-s4vectors@0.48.0 r-rtracklayer@1.70.0 r-matrix@1.7-4 r-glmnet@4.1-10 r-genomicranges@1.62.0 r-genomeinfodb@1.46.0 r-foreach@1.5.2 r-dplyr@1.1.4 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://github.com/CompBioIPM/ocrRBBR
Licenses: GPL 3
Build system: r
Synopsis: Explain Gene Expression with Boolean Rules of Chromatin States
Description:

This package infers Boolean rules among cis-regulatory regions using paired chromatin accessibility and gene expression data at bulk and single-cell levels. Links regulatory regions to target genes, providing insights into gene regulation mechanisms.

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Total results: 69112