Python bindings to spoa.

Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)

Lightweight, super fast library for sequence alignment using edit (Levenshtein) distance.

FastDup is a tool designed to locate and tag duplicate reads in a coordinate-sorted SAM or BAM file. It uses the same core algorithm as Picard MarkDuplicates to produce identical results and utilizes spdlog for logging, with the default level set to 'info'.

Minibwa aligns short reads against a reference genome. It is the successor of bwa-mem with a different algorithm. Minibwa is over three times as fast as the original bwa-mem and twice as fast as bwa-mem2 at comparable accuracy. While minibwa works with accurate long reads, minimap2 is more robust under high error rate.

Fastp is a tool designed to provide fast all-in-one preprocessing for FastQ files. This tool has multi-threading support to afford high performance.

bcftools-compatible querying and format conversion for VCF Zarr.

A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy.

GCTA (Genome-wide Complex Trait Analysis) is a software package initially developed to estimate the proportion of phenotypic variance explained by all genome-wide SNPs for a complex trait but has been greatly extended for many other analyses of data from genome-wide association studies (GWASs).

pixy is a command-line tool for painlessly computing unbiased estimators of population genetic summary statistics that measure genetic variation within (π, θW, Tajima’s D) and between (dxy, FST) populations from a VCF. In particular, pixy facilitates the use of VCFs containing invariant (monomorphic) sites, which are essential for the correct computation of π and dxy in the face of missing data (i.e. always).

This package provides Site frequency spectrum estimation based on window expectation-maximisation algorithm.

ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.

This package provides utilities for exploratory analysis of large scale genetic variation data.

This package provides Site frequency spectrum estimation based on window expectation-maximisation algorithm.

This package provides Bindings to libdeflate for DEFLATE (de)compression exposed as non-streaming buffer operations. Contains bindings for raw deflate, zlib, and gzip data.

Abaddon is a Discord client that does not run on Electron.

Keychain is a thin cross-platform wrapper to access the operating system's credential storage in C++. Keychain supports getting, adding/replacing, and deleting passwords on macOS, Linux, and Windows.

IXWebSocket is a C++ library for WebSocket client and server development. It has minimal dependencies (no boost), is very simple to use and support everything you'll likely need for websocket dev (SSL, deflate compression, compiles on most platforms, etc...).

BadWolf is a minimalist and privacy-oriented WebKitGTK+ browser

Falkon is is a Qt-based web browser for KDE.

gcalcli is a Python application that allows you to access your Google Calendar(s) from a command line. It's easy to get your agenda, search for events, add new events, delete events, edit events, see recently updated events, and even import those annoying ICS/vCal invites from Microsoft Exchange and/or other sources. Additionally, gcalcli can be used as a reminder service and execute any application you want when an event is coming up.

gcalcli is a Python application that allows you to access your Google Calendar(s) from a command line. It's easy to get your agenda, search for events, add new events, delete events, edit events, see recently updated events, and even import those annoying ICS/vCal invites from Microsoft Exchange and/or other sources. Additionally, gcalcli can be used as a reminder service and execute any application you want when an event is coming up.

gcalcli is a Python application that allows you to access your Google Calendar(s) from a command line. It's easy to get your agenda, search for events, add new events, delete events, edit events, see recently updated events, and even import those annoying ICS/vCal invites from Microsoft Exchange and/or other sources. Additionally, gcalcli can be used as a reminder service and execute any application you want when an event is coming up.

crengine-ng is cross-platform library designed to implement text viewers and e-book readers.