Toys / Webring for GNU Guix channels

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If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.

r-pd-rg-u34c 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.rg.u34c

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for The Manufacturer's Name RG_U34C

Description:

Platform Design Info for The Manufacturer's Name RG_U34C.

r-pd-cotton 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.cotton

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for The Manufacturer's Name Cotton

Description:

Platform Design Info for The Manufacturer's Name Cotton.

r-proper 1.42.0

Propagated dependencies: r-edger@4.8.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/PROPER

Licenses: GPL 2+ GPL 3+

Build system: r

Synopsis: PROspective Power Evaluation for RNAseq

Description:

This package provide simulation based methods for evaluating the statistical power in differential expression analysis from RNA-seq data.

r-pd-mogene-1-0-st-v1 3.14.1

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.mogene.1.0.st.v1

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for Affymetrix MoGene-1_0-st-v1

Description:

Platform Design Info for Affymetrix MoGene-1_0-st-v1.

r-pd-charm-hg18-example 0.99.4

Propagated dependencies: r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.charm.hg18.example

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for NimbleGen charm_hg18_example

Description:

Platform Design Info for NimbleGen charm_hg18_example.

r-pd-mg-u74bv2 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.mg.u74bv2

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for The Manufacturer's Name MG_U74Bv2

Description:

Platform Design Info for The Manufacturer's Name MG_U74Bv2.

r-pd-chigene-1-1-st 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.chigene.1.1.st

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for Affymetrix ChiGene-1_1-st

Description:

Platform Design Info for Affymetrix ChiGene-1_1-st.

r-pd-citrus 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.citrus

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for The Manufacturer's Name Citrus

Description:

Platform Design Info for The Manufacturer's Name Citrus.

r-pd-bsubtilis 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.bsubtilis

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for The Manufacturer's Name Bsubtilis

Description:

Platform Design Info for The Manufacturer's Name Bsubtilis.

r-pd-clariom-s-mouse 3.14.1

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.clariom.s.mouse

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for Affymetrix Clariom_S_Mouse

Description:

Platform Design Info for Affymetrix Clariom_S_Mouse.

r-pd-canine 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.canine

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for The Manufacturer's Name Canine

Description:

Platform Design Info for The Manufacturer's Name Canine.

r-pvac 1.58.0

Propagated dependencies: r-biobase@2.70.0 r-affy@1.88.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pvac

Licenses: LGPL 2.0+

Build system: r

Synopsis: PCA-based gene filtering for Affymetrix arrays

Description:

The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).

r-proteodisco 1.16.0

Propagated dependencies: r-xvector@0.50.0 r-variantannotation@1.56.0 r-tidyr@1.3.1 r-tibble@3.3.0 r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rlang@1.1.6 r-plyr@1.8.9 r-parallellogger@3.5.1 r-iranges@2.44.0 r-genomicranges@1.62.0 r-genomicfeatures@1.62.0 r-genomeinfodb@1.46.0 r-dplyr@1.1.4 r-cleaver@1.48.0 r-checkmate@2.3.3 r-biostrings@2.78.0 r-biocparallel@1.44.0 r-biocgenerics@0.56.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://github.com/ErasmusMC-CCBC/ProteoDisco

Licenses: GPL 3

Build system: r

Synopsis: Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences

Description:

ProteoDisco is an R package to facilitate proteogenomics studies. It houses functions to create customized (variant) protein databases based on user-submitted genomic variants, splice-junctions, fusion genes and manual transcript sequences. The flexible workflow can be adopted to suit a myriad of research and experimental settings.

r-pqsfinder 2.26.0

Propagated dependencies: r-s4vectors@0.48.0 r-rcpp@1.1.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-biostrings@2.78.0 r-bh@1.87.0-1

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://pqsfinder.fi.muni.cz

Licenses: FreeBSD

Build system: r

Synopsis: Identification of potential quadruplex forming sequences

Description:

Pqsfinder detects DNA and RNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, pqsfinder is able to detect G4s folded from imperfect G-runs containing bulges or mismatches or G4s having long loops. Pqsfinder also assigns an integer score to each hit that was fitted on G4 sequencing data and corresponds to expected stability of the folded G4.

r-pd-rta-1-0 3.12.2

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.rta.1.0

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for Affymetrix RTA-1_0

Description:

Platform Design Info for Affymetrix RTA-1_0.

r-pd-clariom-s-human-ht 3.14.1

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.clariom.s.human.ht

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for Affymetrix Clariom_S_Human_HT

Description:

Platform Design Info for Affymetrix Clariom_S_Human_HT.

r-pd-chicken 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.chicken

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for The Manufacturer's Name Chicken

Description:

Platform Design Info for The Manufacturer's Name Chicken.

r-prince 1.26.0

Propagated dependencies: r-tidyr@1.3.1 r-tester@0.3.0 r-speedglm@0.3-5 r-robustbase@0.99-6 r-rdpack@2.6.4 r-ranger@0.17.0 r-purrr@1.2.0 r-progress@1.2.3 r-naivebayes@1.0.0 r-msnbase@2.36.0 r-magrittr@2.0.4 r-liblinear@2.10-24 r-hmisc@5.2-4 r-forecast@8.24.0 r-dplyr@1.1.4 r-biobase@2.70.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/PrInCE

Licenses: FSDG-compatible

Build system: r

Synopsis: Predicting Interactomes from Co-Elution

Description:

PrInCE (Predicting Interactomes from Co-Elution) uses a naive Bayes classifier trained on dataset-derived features to recover protein-protein interactions from co-elution chromatogram profiles. This package contains the R implementation of PrInCE.

r-pd-mg-u74a 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.mg.u74a

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for The Manufacturer's Name MG_U74A

Description:

Platform Design Info for The Manufacturer's Name MG_U74A.

r-piuma 1.5.0

Propagated dependencies: r-vegan@2.7-2 r-umap@0.2.10.0 r-tsne@0.1-3.1 r-summarizedexperiment@1.40.0 r-scales@1.4.0 r-patchwork@1.3.2 r-kernlab@0.9-33 r-igraph@2.2.1 r-hmisc@5.2-4 r-ggplot2@4.0.1 r-dbscan@1.2.3 r-cluster@2.1.8.1

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://github.com/BioinfoMonzino/PIUMA

Licenses: FSDG-compatible

Build system: r

Synopsis: Phenotypes Identification Using Mapper from topological data Analysis

Description:

The PIUMA package offers a tidy pipeline of Topological Data Analysis frameworks to identify and characterize communities in high and heterogeneous dimensional data.

r-pepsnmrdata 1.28.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/PepsNMRData

Licenses: GPL 2 FSDG-compatible

Build system: r

Synopsis: Datasets for the PepsNMR package

Description:

This package contains all the datasets used in the PepsNMR package.

r-psichomics 1.36.1

Propagated dependencies: r-xtable@1.8-4 r-xml@3.99-0.20 r-survival@3.8-3 r-summarizedexperiment@1.40.0 r-stringr@1.6.0 r-shinyjs@2.1.0 r-shinybs@0.61.1 r-shiny@1.11.1 r-rfast@2.1.5.2 r-reshape2@1.4.5 r-recount@1.36.0 r-rcpp@1.1.0 r-r-utils@2.13.0 r-purrr@1.2.0 r-plyr@1.8.9 r-pairsd3@0.1.3 r-limma@3.66.0 r-jsonlite@2.0.0 r-httr@1.4.7 r-htmltools@0.5.8.1 r-highcharter@0.9.4 r-ggrepel@0.9.6 r-ggplot2@4.0.1 r-fastmatch@1.1-6 r-fastica@1.2-7 r-edger@4.8.0 r-dt@0.34.0 r-dplyr@1.1.4 r-digest@0.6.39 r-data-table@1.17.8 r-colourpicker@1.3.0 r-cluster@2.1.8.1 r-biocfilecache@3.0.0 r-annotationhub@4.0.0 r-annotationdbi@1.72.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://nuno-agostinho.github.io/psichomics/

Licenses: Expat

Build system: r

Synopsis: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Description:

Interactive R package with an intuitive Shiny-based graphical interface for alternative splicing quantification and integrative analyses of alternative splicing and gene expression based on The Cancer Genome Atlas (TCGA), the Genotype-Tissue Expression project (GTEx), Sequence Read Archive (SRA) and user-provided data. The tool interactively performs survival, dimensionality reduction and median- and variance-based differential splicing and gene expression analyses that benefit from the incorporation of clinical and molecular sample-associated features (such as tumour stage or survival). Interactive visual access to genomic mapping and functional annotation of selected alternative splicing events is also included.

r-pd-yg-s98 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0

Channel: guix-bioc

Location: guix-bioc/packages/p.scm (guix-bioc packages p)

Home page: https://bioconductor.org/packages/pd.yg.s98

Licenses: Artistic License 2.0

Build system: r

Synopsis: Platform Design Info for The Manufacturer's Name YG_S98

Description:

Platform Design Info for The Manufacturer's Name YG_S98.

r-pd-soybean 3.12.0

Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0