Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.

Affymetrix Affymetrix HG-U133B Array annotation data (chip hgu133b) assembled using data from public repositories.

This package provides a package containing an environment representing the HT_MG-430B.cdf file.

Sample dataset obtained from http://www.hapmap.org.

Affymetrix Affymetrix HG_U95C Array annotation data (chip hgu95c) assembled using data from public repositories.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu35KsubA\_probe\_tab.

Affymetrix hta20 annotation data (chip hta20transcriptcluster) assembled using data from public repositories.

HMP2Data is a Bioconductor package of the Human Microbiome Project 2 (HMP2) 16S rRNA sequencing data. Processed data is provided as phyloseq, SummarizedExperiment, and MultiAssayExperiment class objects. Individual matrices and data.frames used for building these S4 class objects are also provided in the package.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG-U133\_Plus\_2\_probe\_tab.

Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster) assembled using data from public repositories.

agilent AMADID 026652 annotation data (chip hgug4845a) assembled using data from public repositories.

Testing individual SNPs, as well as arbitrarily large groups of SNPs in GWA studies, using a joint model of all SNPs. The method controls the FWER, and provides an automatic, data-driven refinement of the SNP clusters to smaller groups or single markers.

Affymetrix Affymetrix HG-Focus Array annotation data (chip hgfocus) assembled using data from public repositories.

Base annotation databases for human, intended ONLY to be used by AnnotationDbi to produce regular annotation packages.

This package provides a package containing an environment representing the HG-U133A_tag.CDF file.

Affymetrix huex10 annotation data (chip huex10stprobeset) assembled using data from public repositories.

Affymetrix hugene11 annotation data (chip hugene11stprobeset) assembled using data from public repositories.

This package provides a package containing an environment representing the Hu6800subC.CDF file.

Affymetrix Affymetrix HT_HG-U133A Array annotation data (chip hthgu133a) assembled using data from public repositories.

Sample dataset obtained from http://www.hapmap.org.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HG\_U95A\_probe\_tab.

Package with metadata fast genotyping Illumina 1M arrays using the crlmm package.

Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb) assembled using data from public repositories.

Package with metadata for genotyping Illumina Omni5 Quad arrays using the crlmm package.