_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-pd-canine 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.canine
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Canine
Description:

Platform Design Info for The Manufacturer's Name Canine.

r-pd-mg-u74cv2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mg.u74cv2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name MG_U74Cv2
Description:

Platform Design Info for The Manufacturer's Name MG_U74Cv2.

r-pd-drosgenome1 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.drosgenome1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name DrosGenome1
Description:

Platform Design Info for The Manufacturer's Name DrosGenome1.

r-paa 1.44.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://www.ruhr-uni-bochum.de/mpc/software/PAA/
Licenses: Modified BSD
Build system: r
Synopsis: PAA (Protein Array Analyzer)
Description:

PAA imports single color (protein) microarray data that has been saved in gpr file format - esp. ProtoArray data. After preprocessing (background correction, batch filtering, normalization) univariate feature preselection is performed (e.g., using the "minimum M statistic" approach - hereinafter referred to as "mMs"). Subsequently, a multivariate feature selection is conducted to discover biomarker candidates. Therefore, either a frequency-based backwards elimination aproach or ensemble feature selection can be used. PAA provides a complete toolbox of analysis tools including several different plots for results examination and evaluation.

r-polytect 1.2.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/emmachenlingo/Polytect
Licenses: Artistic License 2.0
Build system: r
Synopsis: An R package for digital data clustering
Description:

Polytect is an advanced computational tool designed for the analysis of multi-color digital PCR data. It provides automatic clustering and labeling of partitions into distinct groups based on clusters first identified by the flowPeaks algorithm. Polytect is particularly useful for researchers in molecular biology and bioinformatics, enabling them to gain deeper insights into their experimental results through precise partition classification and data visualization.

r-promise 1.62.0
Propagated dependencies: r-gseabase@1.72.0 r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PROMISE
Licenses: GPL 2+
Build system: r
Synopsis: PRojection Onto the Most Interesting Statistical Evidence
Description:

This package provides a general tool to identify genomic features with a specific biologically interesting pattern of associations with multiple endpoint variables as described in Pounds et. al. (2009) Bioinformatics 25: 2013-2019.

r-plasmodiumanophelesprobe 2.18.0
Propagated dependencies: r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/plasmodiumanophelesprobe
Licenses: LGPL 2.0+
Build system: r
Synopsis: Probe sequence data for microarrays of type plasmodiumanopheles
Description:

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Plasmodium\_Anopheles\_probe\_tab.

r-pd-mirna-2-0 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.2.0
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix miRNA-2_0
Description:

Platform Design Info for Affymetrix miRNA-2_0.

r-pathostat 1.36.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/mani2012/PathoStat
Licenses: GPL 2+
Build system: r
Synopsis: PathoStat Statistical Microbiome Analysis Package
Description:

The purpose of this package is to perform Statistical Microbiome Analysis on metagenomics results from sequencing data samples. In particular, it supports analyses on the PathoScope generated report files. PathoStat provides various functionalities including Relative Abundance charts, Diversity estimates and plots, tests of Differential Abundance, Time Series visualization, and Core OTU analysis.

r-panelcn-mops 1.32.0
Propagated dependencies: r-seqinfo@1.0.0 r-s4vectors@0.48.0 r-rsamtools@2.26.0 r-iranges@2.44.0 r-genomicranges@1.62.0 r-cn-mops@1.56.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/panelcn.mops
Licenses: LGPL 2.0+
Build system: r
Synopsis: CNV detection tool for targeted NGS panel data
Description:

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

r-pd-ecoli 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.ecoli
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Ecoli
Description:

Platform Design Info for The Manufacturer's Name Ecoli.

r-pviz 1.44.0
Propagated dependencies: r-iranges@2.44.0 r-gviz@1.54.0 r-genomicranges@1.62.0 r-data-table@1.17.8 r-biovizbase@1.58.0 r-biostrings@2.78.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/Pviz
Licenses: Artistic License 2.0
Build system: r
Synopsis: Peptide Annotation and Data Visualization using Gviz
Description:

Pviz adapts the Gviz package for protein sequences and data.

r-pd-x-laevis-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.x.laevis.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name X_laevis_2
Description:

Platform Design Info for The Manufacturer's Name X_laevis_2.

r-pd-mouse430-2 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mouse430.2
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Mouse430_2
Description:

Platform Design Info for The Manufacturer's Name Mouse430_2.

r-pd-rjpgene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rjpgene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix RJpGene-1_0-st
Description:

Platform Design Info for Affymetrix RJpGene-1_0-st.

r-pirat 1.4.4
Propagated dependencies: r-summarizedexperiment@1.40.0 r-s4vectors@0.48.0 r-reticulate@1.44.1 r-progress@1.2.3 r-mass@7.3-65 r-invgamma@1.2 r-ggplot2@4.0.1 r-basilisk@1.22.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: http://www.prostar-proteomics.org/
Licenses: GPL 2
Build system: r
Synopsis: Precursor or Peptide Imputation under Random Truncation
Description:

Pirat enables the imputation of missing values (either MNARs or MCARs) in bottom-up LC-MS/MS proteomics data using a penalized maximum likelihood strategy. It does not require any parameter tuning, it models the instrument censorship from the data available. It accounts for sibling peptides correlations and it can leverage complementary transcriptomics measurements.

r-pd-poplar 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.poplar
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Poplar
Description:

Platform Design Info for The Manufacturer's Name Poplar.

r-pd-cyngene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.cyngene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix CynGene-1_0-st
Description:

Platform Design Info for Affymetrix CynGene-1_0-st.

r-pd-maize 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.maize
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Maize
Description:

Platform Design Info for The Manufacturer's Name Maize.

r-partcnv 1.8.0
Propagated dependencies: r-singlecellexperiment@1.32.0 r-seurat@5.3.1 r-magrittr@2.0.4 r-genomicranges@1.62.0 r-depmixs4@1.5-1 r-data-table@1.17.8 r-biocstyle@2.38.0 r-annotationhub@4.0.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/partCNV
Licenses: GPL 2
Build system: r
Synopsis: Infer locally aneuploid cells using single cell RNA-seq data
Description:

This package uses a statistical framework for rapid and accurate detection of aneuploid cells with local copy number deletion or amplification. Our method uses an EM algorithm with mixtures of Poisson distributions while incorporating cytogenetics information (e.g., regional deletion or amplification) to guide the classification (partCNV). When applicable, we further improve the accuracy by integrating a Hidden Markov Model for feature selection (partCNVH).

r-pd-mirna-3-1 3.8.1
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.mirna.3.1
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix miRNA-3_1
Description:

Platform Design Info for Affymetrix miRNA-3_1.

r-peakcombiner 1.0.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://github.com/novartis/peakCombiner/
Licenses: Expat
Build system: r
Synopsis: The R package to curate and merge enriched genomic regions into consensus peak sets
Description:

peakCombiner, a fully R based, user-friendly, transparent, and customizable tool that allows even novice R users to create a high-quality consensus peak list. The modularity of its functions allows an easy way to optimize input and output data. A broad range of accepted input data formats can be used to create a consensus peak set that can be exported to a file or used as the starting point for most downstream peak analyses.

r-pd-medgene-1-0-st 3.12.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.medgene.1.0.st
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for Affymetrix MedGene-1_0-st
Description:

Platform Design Info for Affymetrix MedGene-1_0-st.

r-predasampledata 0.50.0
Propagated dependencies: r-preda@1.56.0 r-biobase@2.70.0 r-annotate@1.88.0 r-affy@1.88.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/PREDAsampledata
Licenses: Artistic License 2.0
Build system: r
Synopsis: expression and copy number data on clear cell renal carcinoma samples
Description:

Sample data for PREDA package. (annotations objects synchronized with GeneAnnot custom CDFs version 2.2.0).

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Total results: 69112