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Platform Design Info for The Manufacturer's Name HC_G110.
Platform Design Info for The Manufacturer's Name MG_U74B.
Platform Design Info for Affymetrix OviGene-1_1-st.
Platform Design Info for Affymetrix RUSGene-1_1-st.
Platform Design Info for Affymetrix RCnGene-1_1-st.
Platform Design Info for Affymetrix CHOGene-2_0-st.
Platform Design Info for Affymetrix AraGene-1_1-st.
This package provides kallisto workflow and transcript expression of RNA-Seq data from Brooks et al.
Platform Design Info for The Manufacturer's Name MG_U74Cv2.
This package provides a toolkit of high-level functions for DNA motif scanning and enrichment analysis built upon Biostrings. The main functionality is PWM enrichment analysis of already known PWMs (e.g. from databases such as MotifDb), but the package also implements high-level functions for PWM scanning and visualisation. The package does not perform "de novo" motif discovery, but is instead focused on using motifs that are either experimentally derived or computationally constructed by other tools.
Platform Design Info for Affymetrix Clariom_S_Rat.
Platform Design Info for The Manufacturer's Name Mouse430_2.
This package contains data required to run examples in prebs package. The data files include: 1) Small sample bam files for demonstration purposes 2) Probe sequence mappings for Custom CDF (taken from http://brainarray.mbni.med.umich.edu/brainarray/Database/CustomCDF/genomic_curated_CDF.asp) 3) Probe sequence mappings for manufacturer's CDF (manually created using bowtie).
Platform Design Info for Affymetrix MedGene-1_0-st.
Platform Design Info for Affymetrix CHOGene-2_1-st.
Platform Design Info for Affymetrix AraGene-1_0-st.
Platform Design Info for Affymetrix EleGene-1_1-st.
This package provides a package containing an environment representing the Pae_G1a.CDF file.
This package provides a package containing metadata for POCRC arrays assembled using data from public repositories.
Platform Design Info for Affymetrix GuiGene-1_0-st.
Platform Design Info for Affymetrix ZebGene-1_0-st.
Platform Design Info for Affymetrix RUSGene-1_0-st.
Pigengene package provides an efficient way to infer biological signatures from gene expression profiles. The signatures are independent from the underlying platform, e.g., the input can be microarray or RNA Seq data. It can even infer the signatures using data from one platform, and evaluate them on the other. Pigengene identifies the modules (clusters) of highly coexpressed genes using coexpression network analysis, summarizes the biological information of each module in an eigengene, learns a Bayesian network that models the probabilistic dependencies between modules, and builds a decision tree based on the expression of eigengenes.
Platform Design Info for The Manufacturer's Name Maize.