This package provides a package containing an environment representing the HGU133Plus2_Hs_Hspec.cdf file.

data from a yeast ChIP-chip experiment.

Sample dataset obtained from http://www.hapmap.org.

This package provides a package containing an environment representing the HC_G110.cdf file.

This package provides classes and functions for quality control, filtering, normalization and differential expression analysis of pre-processed `RNA-seq` data. Data can be imported from `SummarizedExperiment` as well as `matrix` objects and can be annotated from `BioMart`. Filtering for genes without too low expression or containing required annotations, as well as filtering for samples with sufficient correlation to other samples or total number of reads is supported. The standard normalization methods including cpm, rpkm and tpm can be used, and DESeq2` as well as voom differential expression analyses are available.

This package provides a package containing an environment representing the HG_U95C.CDF file.

Agilent "Human Genome, Whole" annotation data (chip hgug4112a) assembled using data from public repositories.

Package with metadata for genotyping Illumina Omni Express 12 arrays using the crlmm package.

This package provides a package containing an environment representing the HG_U95E.CDF file.

This package provides a package containing an environment representing the HT_MG-430B.cdf file.

Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster) assembled using data from public repositories.

Affymetrix Affymetrix HG-Focus Array annotation data (chip hgfocus) assembled using data from public repositories.

This package contains the experimental data and a complete executable transcript (vignette) of the statistical analysis presented in the paper "Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages" by Y. Ohnishi, W. Huber, A. Tsumura, M. Kang, P. Xenopoulos, K. Kurimoto, A. K. Oles, M. J. Arauzo-Bravo, M. Saitou, A.-K. Hadjantonakis and T. Hiiragi; Nature Cell Biology (2014) 16(1): 27-37. doi: 10.1038/ncb2881.".

This package provides a package containing an environment representing the Hu6800.CDF file.

Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a) assembled using data from public repositories.

Affymetrix Affymetrix HT_HG-U133_Plus_B Array annotation data (chip hthgu133plusb) assembled using data from public repositories.

R objects describing the HEEBO oligo set.

HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was Hu6800\_probe\_tab.

Package with metadata for genotyping Illumina 650k arrays using the crlmm package.

This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was HuGene-1\_0-st-v1\_probe\_tab.

Package with metadata for genotyping Illumina Omni5 Quad arrays using the crlmm package.

This package provides a package containing an environment representing the HG-U133A.cdf file.

This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).