This package provides a comprehensive toolbox for analysing Spatial Point Patterns. It is focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. It also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. It supports spatial covariate data such as pixel images and contains over 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.

The pls package implements multivariate regression methods: Partial Least Squares Regression (PLSR), Principal Component Regression (PCR), and Canonical Powered Partial Least Squares (CPPLS). It supports:

• several algorithms: the traditional orthogonal scores (NIPALS) PLS algorithm, kernel PLS, wide kernel PLS, Simpls, and PCR through svd

• multi-response models (or PLS2)

• flexible cross-validation

• Jackknife variance estimates of regression coefficients

• extensive and flexible plots: scores, loadings, predictions, coefficients, (R)MSEP, R², and correlation loadings

• formula interface, modelled after lm(), with methods for predict, print, summary, plot, update, etc.

• extraction functions for coefficients, scores, and loadings

• MSEP, RMSEP, and R² estimates

• multiplicative scatter correction (MSC)

This package provides functions for fitting general linear structural equation models (with observed and latent variables) using the RAM approach, and for fitting structural equations in observed-variable models by two-stage least squares.

This package provides functions and data to construct technical trading rules with R.

Iterated race is an extension of the Iterated F-race method for the automatic configuration of optimization algorithms, that is, (offline) tuning their parameters by finding the most appropriate settings given a set of instances of an optimization problem.

This package provides tools for the computation of the matrix exponential, logarithm, square root, and related quantities.

This package enables construction of continuous and non-contiguous area cartograms.

oai provides a general purpose client to work with any Open Archives Initiative Protocol for 'Metadata' Harvesting (OAI-PMH) service. Functions are provided to work with the OAI-PMH verbs: GetRecord, Identify, ListIdentifiers, ListMetadataFormats, ListRecords, and ListSets.

This package provides functions for Constraint Based Simulation using Flux Balance Analysis and informative analysis of the data generated during simulation.

This package provides tools and functions for managing the download of binary files. Binary repositories are defined in the YAML format. Defining new pre-download, download and post-download templates allow additional repositories to be added.

This package provides methods for manipulating regression models and for describing these in a style adapted for medical journals. It contains functions for generating an HTML table with crude and adjusted estimates, plotting hazard ratio, plotting model estimates and confidence intervals using forest plots, extending this to comparing multiple models in a single forest plots. In addition to the descriptive methods, there are functions for the robust covariance matrix provided by the sandwich package, a function for adding non-linearities to a model, and a wrapper around the Epi package's Lexis() functions for time-splitting a dataset when modeling non-proportional hazards in Cox regressions.

This package provides tools to create pretty tables for HTML documents and other formats. Functions are provided to let users create tables, modify and format their content. It extends the officer package and can be used within R markdown documents when rendering to HTML and to Word documents.

This package provides a set of tools to permute multisets without loops or hash tables and to generate integer partitions. Cool-lex order is similar to colexicographical order.

In order to reduce potential package dependencies and conflicts, generics provides a number of commonly used S3 generics that are not provided by base R methods related to model fitting.

This package offers an easy to use way to draw a Venn diagram with ggplot2.

This package provides common base and stats methods for rle objects, aiming to make it possible to treat them transparently as vectors.

The Rsolnp package implements a general non-linear augmented Lagrange multiplier method solver, a sequential quadratic programming (SQP) based solver).

This package provides tools to query the U.S. National Library of Medicine's Clinical Trials database. Functions are provided for a variety of techniques for searching the data using range queries, categorical filtering, and by searching for full-text keywords. Minimal graphical tools are also provided for interactively exploring the constructed data.

This is a package for graphical and statistical analyses of environmental data, with a focus on analyzing chemical concentrations and physical parameters, usually in the context of mandated environmental monitoring. It provides major environmental statistical methods found in the literature and regulatory guidance documents, with extensive help that explains what these methods do, how to use them, and where to find them in the literature. It comes with numerous built-in data sets from regulatory guidance documents and environmental statistics literature. It includes scripts reproducing analyses presented in the book "EnvStats: An R Package for Environmental Statistics" (Millard, 2013, Springer, ISBN 978-1-4614-8455-4, https://link.springer.com/book/10.1007/978-1-4614-8456-1).

This package estimates the parameters in Dirichlet-Multinomial and computes log-likelihoods.

Framework for visualising tables of counts, proportions and probabilities. The framework is called product plots, alluding to the computation of area as a product of height and width, and the statistical concept of generating a joint distribution from the product of conditional and marginal distributions. The framework, with extensions, is sufficient to encompass over 20 visualisations previously described in fields of statistical graphics and infovis, including bar charts, mosaic plots, treemaps, equal area plots and fluctuation diagrams.

This package loads electrophysiology data from ABF2 files, as created by Axon Instruments/Molecular Devices software. Only files recorded in gap-free mode are currently supported.

This package provides a simple interface to lat/long projection and datum transformation of the PROJ.4 cartographic projections library. It allows transformation of geographic coordinates from one projection and/or datum to another.

This package provides an implementation of the Anderson-Darling GoF test with p-value calculation based on Marsaglia's 2004 paper "Evaluating the Anderson-Darling Distribution".