Datatree is a prototype implementation of a tree-like hierarchical data structure for xarray. Datatree is in the process of being merged upstream into xarray.

This package provides tools to easily search and download French data from INSEE and IGN APIs. This data includes more than 150 000 macroeconomic series, a dozen datasets of local french data, numerous sources available on insee.fr, geographical limits of administrative areas taken from IGN as well as key metadata and SIRENE database containing data on all French compagnies.

This is the Python package for ECOS: Embedded Cone Solver. ECOS is numerical software for solving convex second-order cone programs (SOCPs).

PyQtGraph is a Pure-python graphics library for PyQt5, PyQt6, PySide2 and PySide6. It is intended for use in mathematics, scientific or engineering applications.

paramz is a lightweight parameterization framework for parameterized model creation and handling. Its features include:

• Easy model creation with parameters.

• Fast optimized access of parameters for optimization routines.

• Memory efficient storage of parameters (only one copy in memory).

• Renaming of parameters.

• Intuitive printing of models and parameters.

• Gradient saving directly inside parameters.

• Gradient checking of parameters.

• Optimization of parameters.

• Jupyter notebook integration.

• Efficient storage of models, for reloading.

• Efficient caching.

Einops provides a set of tensor operations for NumPy and multiple deep learning frameworks.

AlgoPy provides a functionality to differentiate functions implemented as computer programs by using Algorithmic Differentiation (AD) techniques in the forward and reverse mode.

The forward mode propagates univariate Taylor polynomials of arbitrary order. Hence it is also possible to use AlgoPy to evaluate higher-order derivative tensors. The reverse mode is also known as backpropagation and can be found in similar form in tools like PyTorch. Speciality of AlgoPy is the possibility to differentiate functions that contain matrix functions as +,-,*,/, dot, solve, qr, eigh, cholesky.

Pyzo is a Python IDE focused on interactivity and introspection,which makes it very suitable for scientific computing. Its practical design is aimed at simplicity and efficiency.

It consists of two main components, the editor and the shell, and uses a set of pluggable tools to help the programmer in various ways. Some example tools are source structure, project manager, interactive help, workspace...

The OSQP (Operator Splitting Quadratic Program) solver is a numerical optimization package.

Snakemake aims to reduce the complexity of creating workflows by providing a clean and modern domain specific specification language (DSL) in Python style, together with a fast and comfortable execution environment.

The TDDA Python module provides command-line and Python API support for the overall process of data analysis, through tools that perform reference testing, constraint discovery for data, automatic inference of regular expressions from text data and automatic test generation.

pandarallel allows any Pandas user to take advantage of their multi-core computer, while Pandas uses only one core. pandarallel also offers nice progress bars (available on Notebook and terminal) to get an rough idea of the remaining amount of computation to be done.

This is a Python implementation of the APTED algorithm,which supersedes the RTED algorithm for computing the tree edit distance.

Thi package implements a functionality for mean-preserving interpolation of 1D data (for example, time series) with splines.

nibabel is a library that provides read and write access to common neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, CIFTI-2, MINC1, MINC2, AFNI BRIK/HEAD, ECAT and Philips PAR/REC. In addition, NiBabel also supports FreeSurfer’s MGH, geometry, annotation and morphometry files, and provides some limited support for DICOM.

This is a Python implementation of UpSet plots by Lex et al. UpSet plots are used to visualize set overlaps; like Venn diagrams but more readable.

This package provides a stable interface for interactions between Snakemake and its executor plugins.

Marsilea is a Python library for creating composable visualizations in a declarative way. It is built on top of Matplotlib and provides a high-level API for you to puzzle different visualizations together like logo.

This package contains colormaps for commonly-used oceanographic variables. Most of the colormaps started from matplotlib colormaps, but have now been adjusted using the viscm tool to be perceptually uniform.

Optimized einsum can significantly reduce the overall execution time of einsum-like expressions by optimizing the expression's contraction order and dispatching many operations to canonical BLAS, cuBLAS, or other specialized routines. Optimized einsum is agnostic to the backend and can handle NumPy, Dask, PyTorch, Tensorflow, CuPy, Sparse, Theano, JAX, and Autograd arrays as well as potentially any library which conforms to a standard API. See the documentation for more information.

This package implements a functionality to solve automatic numerical differentiation problems in one or more variables. Finite differences are used in an adaptive manner, coupled with a Richardson extrapolation methodology to provide a maximally accurate result. The user can configure many options like; changing the order of the method or the extrapolation, even allowing the user to specify whether complex-step, central, forward or backward differences are used.

Clarabel.rs is a Rust implementation of an interior point numerical solver for convex optimization problems using a novel homogeneous embedding.

Trimesh is a pure Python library for loading and using triangular meshes with an emphasis on watertight surfaces. The goal of the library is to provide a full featured and well tested Trimesh object which allows for easy manipulation and analysis, in the style of the Polygon object in the Shapely library.

xarray_einstats provides wrappers around some NumPy and SciPy functions and around einops with an API and features adapted to xarray.