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    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-frgepistasis 1.46.0
Propagated dependencies: r-mass@7.3-65 r-fda@6.3.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FRGEpistasis
Licenses: GPL 2
Build system: r
Synopsis: Epistasis Analysis for Quantitative Traits by Functional Regression Model
Description:

This package provides a Tool for Epistasis Analysis Based on Functional Regression Model.

r-flowclean 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowClean
Licenses: Artistic License 2.0
Build system: r
Synopsis: flowClean
Description:

This package provides a quality control tool for flow cytometry data based on compositional data analysis.

r-flowsorted-cordbloodnorway-450k 1.36.0
Propagated dependencies: r-minfi@1.56.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bitbucket.com/kasperdanielhansen/Illumina_CordBlood
Licenses: Artistic License 2.0
Build system: r
Synopsis: Illumina HumanMethylation data on sorted cord blood cell populations
Description:

Raw data objects for the Illumina 450k DNA methylation microarrays, for cell type composition estimation.

r-ffpe 1.54.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/ffpe
Licenses: FSDG-compatible
Build system: r
Synopsis: Quality assessment and control for FFPE microarray expression data
Description:

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

r-fgga 1.18.0
Propagated dependencies: r-rbgl@1.86.0 r-jsonlite@2.0.0 r-igraph@2.2.1 r-grbase@2.0.3 r-graph@1.88.0 r-e1071@1.7-16 r-curl@7.0.0 r-biocfilecache@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/fspetale/fgga
Licenses: GPL 3
Build system: r
Synopsis: Hierarchical ensemble method based on factor graph
Description:

Package that implements the FGGA algorithm. This package provides a hierarchical ensemble method based ob factor graphs for the consistent cross-ontology annotation of protein coding genes. FGGA embodies elements of predicate logic, communication theory, supervised learning and inference in graphical models.

r-flowplots 1.58.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowPlots
Licenses: Artistic License 2.0
Build system: r
Synopsis: flowPlots: analysis plots and data class for gated flow cytometry data
Description:

Graphical displays with embedded statistical tests for gated ICS flow cytometry data, and a data class which stores "stacked" data and has methods for computing summary measures on stacked data, such as marginal and polyfunctional degree data.

r-flowgate 1.10.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowGate
Licenses: Expat
Build system: r
Synopsis: Interactive Cytometry Gating in R
Description:

flowGate adds an interactive Shiny app to allow manual GUI-based gating of flow cytometry data in R. Using flowGate, you can draw 1D and 2D span/rectangle gates, quadrant gates, and polygon gates on flow cytometry data by interactively drawing the gates on a plot of your data, rather than by specifying gate coordinates. This package is especially geared toward wet-lab cytometerists looking to take advantage of R for cytometry analysis, without necessarily having a lot of R experience.

r-fastreer 2.0.0
Dependencies: openjdk@25
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/gkanogiannis/fastreeR
Licenses: GPL 3
Build system: r
Synopsis: Phylogenetic, Distance and Other Calculations on VCF and Fasta Files
Description:

Calculate distances, build phylogenetic trees or perform hierarchical clustering between the samples of a VCF or FASTA file. Functions are implemented in Java-11 and called via rJava. Parallel implementation that operates directly on the VCF or FASTA file for fast execution.

r-ffpeexampledata 1.48.0
Propagated dependencies: r-lumi@2.62.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/ffpeExampleData
Licenses: FSDG-compatible
Build system: r
Synopsis: Illumina DASL example microarray data
Description:

This package provides a subset of GSE17565 (April et al. 2009) containing 32 FFPE samples of Burkitts Lymphoma and Breast Adenocarcinoma, with a dilution series in technical duplicate.

r-fletcher2013b 1.46.0
Propagated dependencies: r-rtn@2.34.1 r-reder@3.6.2 r-rcolorbrewer@1.1-3 r-igraph@2.2.1 r-fletcher2013a@1.46.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: http://dx.doi.org/10.1038/ncomms3464
Licenses: GPL 2+
Build system: r
Synopsis: Master regulators of FGFR2 signalling and breast cancer risk
Description:

This package reproduces the systems biology analysis for the data in package Fletcher2013a using RTN.

r-fenr 1.8.1
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/bartongroup/fenr
Licenses: Expat
Build system: r
Synopsis: Fast functional enrichment for interactive applications
Description:

Perform fast functional enrichment on feature lists (like genes or proteins) using the hypergeometric distribution. Tailored for speed, this package is ideal for interactive platforms such as Shiny. It supports the retrieval of functional data from sources like GO, KEGG, Reactome, Bioplanet and WikiPathways. By downloading and preparing data first, it allows for rapid successive tests on various feature selections without the need for repetitive, time-consuming preparatory steps typical of other packages.

r-fdb-infiniummethylation-hg18 2.2.0
Propagated dependencies: r-txdb-hsapiens-ucsc-hg18-knowngene@3.2.2 r-org-hs-eg-db@3.22.0 r-genomicfeatures@1.62.0 r-biostrings@2.78.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FDb.InfiniumMethylation.hg18
Licenses: Artistic License 2.0
Build system: r
Synopsis: Annotation package for Illumina Infinium DNA methylation probes
Description:

Compiled HumanMethylation27 and HumanMethylation450 annotations.

r-famagg 1.38.0
Propagated dependencies: r-survey@4.4-8 r-matrix@1.7-4 r-kinship2@1.9.6.2 r-igraph@2.2.1 r-gap@1.6 r-biocgenerics@0.56.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/EuracBiomedicalResearch/FamAgg
Licenses: Expat
Build system: r
Synopsis: Pedigree Analysis and Familial Aggregation
Description:

Framework providing basic pedigree analysis and plotting utilities as well as a variety of methods to evaluate familial aggregation of traits in large pedigrees.

r-flowmerge 2.58.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowMerge
Licenses: Artistic License 2.0
Build system: r
Synopsis: Cluster Merging for Flow Cytometry Data
Description:

Merging of mixture components for model-based automated gating of flow cytometry data using the flowClust framework. Note: users should have a working copy of flowClust 2.0 installed.

r-fci 1.40.0
Propagated dependencies: r-zoo@1.8-14 r-venndiagram@1.7.3 r-rgl@1.3.31 r-psych@2.5.6 r-gtools@3.9.5 r-fnn@1.1.4.1
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/fCI
Licenses: GPL 2+
Build system: r
Synopsis: f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics
Description:

(f-divergence Cutoff Index), is to find DEGs in the transcriptomic & proteomic data, and identify DEGs by computing the difference between the distribution of fold-changes for the control-control and remaining (non-differential) case-control gene expression ratio data. fCI provides several advantages compared to existing methods.

r-fobitools 1.18.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/pcastellanoescuder/fobitools/
Licenses: GPL 3
Build system: r
Synopsis: Tools for Manipulating the FOBI Ontology
Description:

This package provides a set of tools for interacting with the Food-Biomarker Ontology (FOBI). A collection of basic manipulation tools for biological significance analysis, graphs, and text mining strategies for annotating nutritional data.

r-fdrame 1.82.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/fdrame
Licenses: GPL 2+
Build system: r
Synopsis: FDR adjustments of Microarray Experiments (FDR-AME)
Description:

This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma.

r-flowcut 1.20.0
Propagated dependencies: r-flowdensity@1.44.0 r-flowcore@2.22.0 r-e1071@1.7-16 r-cairo@1.7-0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowCut
Licenses: Artistic License 2.0
Build system: r
Synopsis: Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis
Description:

Common techinical complications such as clogging can result in spurious events and fluorescence intensity shifting, flowCut is designed to detect and remove technical artifacts from your data by removing segments that show statistical differences from other segments.

r-fdb-ucsc-snp137common-hg19 1.0.0
Propagated dependencies: r-genomicfeatures@1.62.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FDb.UCSC.snp137common.hg19
Licenses: Artistic License 2.0
Build system: r
Synopsis: UCSC common SNPs track for dbSNP build 137
Description:

makeFeatureDbFromUCSC cannot cope with this track, hence a package.

r-flowbeads 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowBeads
Licenses: Artistic License 2.0
Build system: r
Synopsis: flowBeads: Analysis of flow bead data
Description:

This package extends flowCore to provide functionality specific to bead data. One of the goals of this package is to automate analysis of bead data for the purpose of normalisation.

r-fabia 2.56.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: http://www.bioinf.jku.at/software/fabia/fabia.html
Licenses: LGPL 2.1+
Build system: r
Synopsis: FABIA: Factor Analysis for Bicluster Acquisition
Description:

Biclustering by "Factor Analysis for Bicluster Acquisition" (FABIA). FABIA is a model-based technique for biclustering, that is clustering rows and columns simultaneously. Biclusters are found by factor analysis where both the factors and the loading matrix are sparse. FABIA is a multiplicative model that extracts linear dependencies between samples and feature patterns. It captures realistic non-Gaussian data distributions with heavy tails as observed in gene expression measurements. FABIA utilizes well understood model selection techniques like the EM algorithm and variational approaches and is embedded into a Bayesian framework. FABIA ranks biclusters according to their information content and separates spurious biclusters from true biclusters. The code is written in C.

r-fabiadata 1.48.0
Propagated dependencies: r-biobase@2.70.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: http://www.bioinf.jku.at/software/fabia/fabia.html
Licenses: LGPL 2.1+
Build system: r
Synopsis: Data sets for FABIA (Factor Analysis for Bicluster Acquisition)
Description:

Supplying gene expression data sets for the demos of the biclustering method "Factor Analysis for Bicluster Acquisition" (FABIA). The following three data sets are provided: A) breast cancer (van't Veer, Nature, 2002), B) multiple tissues (Su, PNAS, 2002), and C) diffuse large-B-cell lymphoma (Rosenwald, N Engl J Med, 2002).

r-fis 1.38.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/FIs
Licenses: GPL 3
Build system: r
Synopsis: Human Functional Interactions (FIs) for splineTimeR package
Description:

Data set containing two complete lists of identified functional interaction partners in Human. Data are derived from Reactome and BioGRID databases.

r-flowploidydata 1.36.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://bioconductor.org/packages/flowPloidyData
Licenses: GPL 3
Build system: r
Synopsis: Example Flow Cytometry Data
Description:

This package provides a collection of raw flow cytometry data for use in vignettes for the flowPloidy package.

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Total results: 69112