_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/

Enter the query into the form above. You can look for specific version of a package by using @ symbol like this: gcc@10.

API method:

GET /api/packages?search=hello&page=1&limit=20

where search is your query, page is a page number and limit is a number of items on a single page. Pagination information (such as a number of pages and etc) is returned in response headers.

If you'd like to join our channel webring send a patch to ~whereiseveryone/toys@lists.sr.ht adding your channel as an entry in channels.scm.


r-glasso 1.11
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://statweb.stanford.edu/~tibs/glasso/
Licenses: GPL 2
Build system: r
Synopsis: Graphical Lasso: estimation of Gaussian graphical models
Description:

This is a package for estimation of a sparse inverse covariance matrix using a lasso (L1) penalty. Facilities are provided for estimates along a path of values for the regularization parameter.

r-effects 4.2-4
Propagated dependencies: r-cardata@3.0-5 r-colorspace@2.1-2 r-estimability@1.5.1 r-insight@1.4.3 r-lattice@0.22-7 r-lme4@1.1-37 r-nnet@7.3-20 r-survey@4.4-8
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://www.r-project.org
Licenses: GPL 2+
Build system: r
Synopsis: Effect displays for linear, generalized linear, and other models
Description:

Graphical and tabular effect displays, e.g., of interactions, for various statistical models with linear predictors.

r-abemus 1.0.1
Propagated dependencies: r-data-table@1.17.8
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/abemus/
Licenses: GPL 3
Build system: r
Synopsis: Adaptive base error model in ultra-deep sequencing data
Description:

This package provides an implementation of Adaptive Base Error Model in Ultra-deep Sequencing data (ABEMUS), which combines platform-specific genetic knowledge and empirical signal to readily detect and quantify somatic single nucleotide variants (SNVs) in circulating cell free DNA (cfDNA).

r-excelr 0.4.0
Propagated dependencies: r-htmlwidgets@1.6.4 r-jsonlite@2.0.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/Swechhya/excelR
Licenses: Expat
Build system: r
Synopsis: Wrapper of the JavaScript library jExcel
Description:

This package provides an R interface to the jExcel library to create web-based interactive tables and spreadsheets compatible with spreadsheet software.

r-gensa 1.1.15
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=GenSA
Licenses: GPL 2
Build system: r
Synopsis: Generalized simulated annealing
Description:

This package performs search for the global minimum of a very complex non-linear objective function with a very large number of optima.

r-bit 4.6.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://ff.r-forge.r-project.org
Licenses: GPL 2
Build system: r
Synopsis: Class for vectors of 1-bit booleans
Description:

This package provides bitmapped vectors of booleans (no NAs), coercion from and to logicals, integers and integer subscripts, fast boolean operators and fast summary statistics. With bit class vectors of true binary booleans, TRUE and FALSE can be stored with 1 bit only.

r-infer 1.0.9
Propagated dependencies: r-broom@1.0.10 r-cli@3.6.5 r-dplyr@1.1.4 r-generics@0.1.4 r-ggplot2@4.0.1 r-glue@1.8.0 r-lifecycle@1.0.4 r-magrittr@2.0.4 r-patchwork@1.3.2 r-purrr@1.2.0 r-rlang@1.1.6 r-tibble@3.3.0 r-tidyr@1.3.1 r-vctrs@0.6.5
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/tidymodels/infer
Licenses: CC0
Build system: r
Synopsis: Tidy statistical inference
Description:

The objective of this package is to perform inference using an expressive statistical grammar that coheres with the Tidy design framework.

r-logging 0.10-108
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/WLOGSolutions/r-logging
Licenses: GPL 3
Build system: r
Synopsis: R logging implementation of log4j
Description:

This package implements the R version of the log4j package. It offers hierarchic loggers, multiple handlers per logger, level based filtering, space handling in messages and custom formatting.

r-glmmtmb 1.1.13
Propagated dependencies: r-lme4@1.1-37 r-matrix@1.7-4 r-mgcv@1.9-4 r-nlme@3.1-168 r-numderiv@2016.8-1.1 r-pbkrtest@0.5.5 r-rcppeigen@0.3.4.0.2 r-reformulas@0.4.2 r-sandwich@3.1-1 r-tmb@1.9.18
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/glmmTMB
Licenses: AGPL 3+
Build system: r
Synopsis: Generalized linear mixed models
Description:

Fit linear and generalized linear mixed models with various extensions, including zero-inflation. The models are fitted using maximum likelihood estimation via the Template Model Builder. Random effects are assumed to be Gaussian on the scale of the linear predictor and are integrated out using the Laplace approximation. Gradients are calculated using automatic differentiation.

r-embedsom 2.2
Propagated dependencies: r-ggplot2@4.0.1 r-igraph@2.2.1 r-matrix@1.7-4 r-rtsne@0.17 r-umap@0.2.10.0 r-uwot@0.2.4
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/exaexa/EmbedSOM
Licenses: GPL 3+
Build system: r
Synopsis: Fast embedding guided by self-organizing map
Description:

This package provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. It is designed to work with FlowSOM and flow-cytometry use-cases.

r-dtw 1.23-1
Propagated dependencies: r-proxy@0.4-27
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://dtw.r-forge.r-project.org/
Licenses: GPL 2+
Build system: r
Synopsis: Dynamic Time Warping Algorithms
Description:

This package provides a comprehensive implementation of dynamic time warping (DTW) algorithms in R. DTW computes the optimal (least cumulative distance) alignment between points of two time series. Common DTW variants covered include local (slope) and global (window) constraints, subsequence matches, arbitrary distance definitions, normalizations, minimum variance matching, and so on.

r-tidytree 0.4.6
Propagated dependencies: r-ape@5.8-1 r-cli@3.6.5 r-dplyr@1.1.4 r-lazyeval@0.2.2 r-magrittr@2.0.4 r-pillar@1.11.1 r-rlang@1.1.6 r-tibble@3.3.0 r-tidyr@1.3.1 r-tidyselect@1.2.1 r-yulab-utils@0.2.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/GuangchuangYu/tidytree
Licenses: Artistic License 2.0
Build system: r
Synopsis: Tidy tool for phylogenetic tree data manipulation
Description:

Phylogenetic trees generally contain multiple components including nodes, edges, branches and associated data. This package provides an approach to convert tree objects to tidy data frames. It also provides tidy interfaces to manipulate tree data.

r-googlesheets4 1.1.2
Propagated dependencies: r-cellranger@1.1.0 r-cli@3.6.5 r-curl@7.0.0 r-gargle@1.6.0 r-glue@1.8.0 r-googledrive@2.1.2 r-httr@1.4.7 r-ids@1.0.1 r-lifecycle@1.0.4 r-magrittr@2.0.4 r-purrr@1.2.0 r-rematch2@2.1.2 r-rlang@1.1.6 r-tibble@3.3.0 r-vctrs@0.6.5 r-withr@3.0.2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/tidyverse/googlesheets4
Licenses: Expat
Build system: r
Synopsis: Access Google Sheets using the Sheets API V4
Description:

This package lets you interact with Google Sheets through the Sheets API v4. This package can read and write both the metadata and the cell data in a Sheet.

r-highr 0.11
Propagated dependencies: r-xfun@0.54
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/yihui/highr
Licenses: GPL 3+
Build system: r
Synopsis: Syntax highlighting for R source code
Description:

This package provides syntax highlighting for R source code. Currently it supports LaTeX and HTML output. Source code of other languages is supported via Andre Simon's highlight package.

r-generics 0.1.4
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/r-lib/generics
Licenses: GPL 2
Build system: r
Synopsis: Common S3 generics not provided by base R methods
Description:

In order to reduce potential package dependencies and conflicts, generics provides a number of commonly used S3 generics that are not provided by base R methods related to model fitting.

r-visdat 0.6.0
Propagated dependencies: r-cli@3.6.5 r-dplyr@1.1.4 r-forcats@1.0.1 r-ggplot2@4.0.1 r-glue@1.8.0 r-magrittr@2.0.4 r-purrr@1.2.0 r-readr@2.1.6 r-scales@1.4.0 r-tibble@3.3.0 r-tidyr@1.3.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://visdat.njtierney.com/
Licenses: Expat
Build system: r
Synopsis: Preliminary Visualisation of Data
Description:

This package provides procedures to create preliminary exploratory data visualisations of an entire dataset to identify problems or unexpected features using ggplot2.

r-acm4r 1.0
Propagated dependencies: r-mass@7.3-65
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/acm4r/
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Align-and-count method comparisons of RFLP data
Description:

This is a package to compare sequence fragment lengths or molecular weights from pairs of lanes. The number of matching bands in the Restriction Fragment Length Polymorphism (RFLP) data is calculated using the align-and-count method.

r-gridpattern 1.3.1
Propagated dependencies: r-glue@1.8.0 r-memoise@2.0.1 r-png@0.1-8 r-rlang@1.1.6 r-sf@1.0-23
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://trevorldavis.com/R/gridpattern/
Licenses: Expat
Build system: r
Synopsis: Grid pattern grobs
Description:

This package provides grid grobs that fill in a user-defined area with various patterns. It includes enhanced versions of the geometric and image-based patterns originally contained in the ggpattern package as well as original pch, polygon_tiling, regular_polygon, rose, text, wave, and weave patterns plus support for custom user-defined patterns.

r-activityindex 0.3.7
Propagated dependencies: r-data-table@1.17.8 r-matrixstats@1.5.0 r-r-utils@2.13.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/ActivityIndex/
Licenses: GPL 3
Build system: r
Synopsis: Activity Index calculation using raw accelerometry data
Description:

This is a package to read raw accelerometry from GT3X+ accelerometry data and plain table data to calculate the Activity Index from Bai et al. (2016) doi:10.1371/journal.pone.0160644.

r-rrf 1.9.4.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://sites.google.com/site/houtaodeng/rrf
Licenses: GPL 2+
Build system: r
Synopsis: Regularized random forest
Description:

Feature Selection with Regularized Random Forest. This package is based on the randomForest package by Andy Liaw. The key difference is the RRF() function that builds a regularized random forest. Fortran original by Leo Breiman and Adele Cutler, R port by Andy Liaw and Matthew Wiener, Regularized random forest for classification by Houtao Deng, Regularized random forest for regression by Xin Guan. Reference: Houtao Deng (2013) <doi:10.48550/arXiv.1306.0237>.

r-msigdbr 25.1.1
Propagated dependencies: r-assertthat@0.2.1 r-babelgene@22.9 r-curl@7.0.0 r-dplyr@1.1.4 r-lifecycle@1.0.4 r-rlang@1.1.6 r-tibble@3.3.0 r-tidyselect@1.2.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/igordot/msigdbr
Licenses: Expat CC-BY 4.0
Build system: r
Synopsis: MSigDB gene sets for multiple organisms
Description:

This package provides the Molecular Signatures Database (MSigDB) gene sets typically used with the Gene Set Enrichment Analysis (GSEA) software in a standard R data frame with key-value pairs. Included are the original human gene symbols and Entrez IDs as well as the equivalents for various frequently studied model organisms such as mouse, rat, pig, fly, and yeast.

r-pki 0.1-15
Dependencies: openssl@3.0.8 zlib@1.3.1
Propagated dependencies: r-base64enc@0.1-3
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: http://www.rforge.net/PKI
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Public Key Infrastructure for R based on the X.509 standard
Description:

This is a package containing Public Key Infrastructure functions such as verifying certificates, RSA encryption and signing, which can be used to build PKI infrastructure and perform cryptographic tasks.

r-debugme 1.2.0
Propagated dependencies: r-crayon@1.5.3
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/r-lib/debugme#readme
Licenses: Expat
Build system: r
Synopsis: Debug R packages
Description:

This package allows the user to specify debug messages as special string constants, and control debugging of packages via environment variables.

r-sfheaders 0.4.5
Propagated dependencies: r-geometries@0.2.5 r-rcpp@1.1.0
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://dcooley.github.io/sfheaders/
Licenses: Expat
Build system: r
Synopsis: Converts between R objects and Simple Feature objects
Description:

This package converts between R and Simple Feature sf objects, without depending on the Simple Feature library. Conversion functions are available at both the R level, and through Rcpp.

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Total results: 68655